View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3115_low_6 (Length: 603)

Name: NF3115_low_6
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3115_low_6
NF3115_low_6
[»] chr5 (2 HSPs)
chr5 (1-357)||(14497365-14497721)
chr5 (424-594)||(14497113-14497283)
[»] chr8 (8 HSPs)
chr8 (78-151)||(29311064-29311137)
chr8 (78-181)||(29245688-29245791)
chr8 (78-184)||(29215006-29215112)
chr8 (84-151)||(29340548-29340615)
chr8 (69-151)||(29285745-29285827)
chr8 (78-156)||(29357386-29357464)
chr8 (78-151)||(29317581-29317654)
chr8 (90-186)||(29234219-29234315)
[»] chr2 (3 HSPs)
chr2 (92-187)||(30931042-30931137)
chr2 (78-131)||(30910163-30910216)
chr2 (13-186)||(30919556-30919729)
[»] chr3 (1 HSPs)
chr3 (78-184)||(43815048-43815154)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 14497721 - 14497365
Alignment:
Q  1 ttgcatgtgtgcaggatcctccagaaaggccaaaaaatcataacaaaagggatgtgtcgagcgagaattttcagtcatggagtttgtcaggtgaatcatg 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||    
T  14497721 ttgcatgtgtgcaggatcctccagaaaggcctaaaaatcataacaaaagggatgtgttgagtgagaattttcagtcatggagcttgtcgggtgaatcatg 14497622  T
Q  101 tccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaagaaaattaagaagacgtgttaga 200  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  14497621 tccagaaggaacaattccgattagaagaacaacagaacaagacatgttaagggcaagttctatcaacacatttggaagaaaattaagaagacgtgttaga 14497522  T
Q  201 agggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaattaaagtttctgtttgttttttaagttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14497521 agggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaattaaagtttctgtttgttttttaagttt 14497422  T
Q  301 attaaannnnnnnggttcatcaaatgaagcaagacattattaacaaacaaatatact 357  Q
    ||||||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  14497421 attaaatttttttggttcatcaaatgaagcaagacattattaacaaccaaatatact 14497365  T

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Target: chr5; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 424 - 594
Target Start/End: Complemental strand, 14497283 - 14497113
Alignment:
Q  424 ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagttggaatttcattgatgatgaaacttcaaccttttttcctatttatagtga 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14497283 ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagtgggaatttcattgatgatgaaacttcaaccttttttcctatttatagtga 14497184  T
Q  524 ttgcagaatttcatggttcttcagttagttaatgtttcactaaatgatgtttctactcttgtctgtgctgc 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14497183 ttgcagaatttcatggttcttcagttagttaatgtttcactaaatgatgtttctactcttgtgtgtgctgc 14497113  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 29311064 - 29311137
Alignment:
Q  78 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 151  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||    
T  29311064 tggagattgtctggtgaatcatgtcctgaaggaacaattccaattagaagaataacggaacaagacttgttaag 29311137  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 29245688 - 29245791
Alignment:
Q  78 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaa 177  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||| | ||| ||| | |||||  |||  |||||||    
T  29245688 tggagtttgtctggtgaatcatgtcctgaaggaacaattccaattagaagaacaacagaagaagacatctcaagagctggatctattgatagttttggaa 29245787  T
Q  178 gaaa 181  Q
    ||||    
T  29245788 gaaa 29245791  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 29215112 - 29215006
Alignment:
Q  78 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaa 177  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||| |   |||   || |||||||| ||| | ||||| || ||||||||||    
T  29215112 tggagtttttcaggtgaatcatgtccagaaggaacaattccgattagaagaataaaagaaggtgatatgttaagagcttgctctattaacacatttggaa 29215013  T
Q  178 gaaaatt 184  Q
    |||||||    
T  29215012 gaaaatt 29215006  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 29340548 - 29340615
Alignment:
Q  84 ttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 151  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||| | ||||||||| |||||||    
T  29340548 ttgtctggtgaatcatgtcccgaaggaacaattccagttagaagaacaaccgaacaagacttgttaag 29340615  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 29285745 - 29285827
Alignment:
Q  69 tttcagtcatggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 151  Q
    ||||| || |||||||| || |||||||||||||| || |||||||||||||||||||||| | | ||| ||||||| |||||    
T  29285745 tttcaatcgtggagtttatctggtgaatcatgtcctgatggaacaattccaattagaagaataaccgaagaagacatattaag 29285827  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 29357386 - 29357464
Alignment:
Q  78 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggcta 156  Q
    ||||| ||||| ||||||||||| || ||||||||||||||||||||||||  | | ||||||||| ||||||| ||||    
T  29357386 tggagcttgtctggtgaatcatgccctgaaggaacaattccaattagaagagtaacagaacaagacttgttaagagcta 29357464  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 29317581 - 29317654
Alignment:
Q  78 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 151  Q
    ||||| ||||| |||||||||||||| || |||||||||||| ||||||||| | | ||||||||| |||||||    
T  29317581 tggagcttgtctggtgaatcatgtcccgatggaacaattccagttagaagaataacagaacaagacgtgttaag 29317654  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 29234219 - 29234315
Alignment:
Q  90 ggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaagaaaattaa 186  Q
    |||||||||||||| |||| | ||||||||||| ||||||||   || |||||||| ||||| ||  | ||||| |  | |||||||||||||||||    
T  29234219 ggtgaatcatgtcccgaagaatcaattccaattggaagaacaaaagagcaagacatattaagagccggctctattagcaaatttggaagaaaattaa 29234315  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 30931137 - 30931042
Alignment:
Q  92 tgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaagaaaattaag 187  Q
    ||||||||||||||||||||||||||||||||||||| ||   ||| ||||||| ||||| ||||| |||||  | || |||||||||||||||||    
T  30931137 tgaatcatgtccagaaggaacaattccaattagaagagcaaaagaagaagacatattaagagctagctctattgacacgtttggaagaaaattaag 30931042  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 30910216 - 30910163
Alignment:
Q  78 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaaca 131  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  30910216 tggagtttatcaggtgaatcatgttcagaaggaacaattccaattagaagaaca 30910163  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 30919729 - 30919556
Alignment:
Q  13 aggatcctccagaaaggccaaaaaatcataacaaaagggatgtgtcgagcgagaattttcagtcatggagtttgtcaggtgaatcatgtccagaaggaac 112  Q
    ||||||||| |||||| |||| |  ||||||| ||| |||| | | ||| || || ||||| | |||||| || || || |||||||||||||||||| |    
T  30919729 aggatcctcaagaaagaccaagaggtcataaccaaacggatcttttgagtgacaactttcaattatggagcttatctggcgaatcatgtccagaaggatc 30919630  T
Q  113 aattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaagaaaattaa 186  Q
      |||||||||||||||||   ||| ||||||| ||||| ||||| ||||| || || ||||||||||||||||    
T  30919629 tgttccaattagaagaacaaaagaagaagacatattaagagctagctctattaacacgtttggaagaaaattaa 30919556  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 43815154 - 43815048
Alignment:
Q  78 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaa 177  Q
    |||||||| || |||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||| ||||| ||| | ||| | || | ||||| ||    
T  43815154 tggagtttatccggtgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaacagatttgaaa 43815055  T
Q  178 gaaaatt 184  Q
    |||||||    
T  43815054 gaaaatt 43815048  T

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