View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_10 (Length: 469)
Name: NF3116_high_10
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 246 - 450
Target Start/End: Complemental strand, 38981499 - 38981295
Alignment:
| Q |
246 |
gggaatcattccaaataatgtcatccacatcgatcactatgtatggaaatgactacttgccacaaatgtagcttcaaagttcaaatttaaattccatttg |
345 |
Q |
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| T |
38981499 |
gggaatcattccaaataatgttatccacatcgatcactatgtatggaaatgactacttgccacaaatgtagcttcaaagttcaaatttaaattccatttg |
38981400 |
T |
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| Q |
346 |
tggcatatatatcaaattgcttataacaattgtagtaaaattcaactcttcaaaaatagaaaaattatatatatgtcctaaaatctagtatgattaaagg |
445 |
Q |
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| T |
38981399 |
tggcatatatatcaaattgcttataacaattgtagtaaaattcaactcttcaaaaatagaaaaattatatatatgtcctaaaatctagtatgattaaagg |
38981300 |
T |
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| Q |
446 |
cacat |
450 |
Q |
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||||| |
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| T |
38981299 |
cacat |
38981295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 38981714 - 38981527
Alignment:
| Q |
16 |
atgaataaagcttgtcagtttatgaaacagaacttattagtatgatcatcatatattatgctttaaggcctctatcattctctttccccacaaaatacat |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
38981714 |
atgaataaagcttgtcagttt--gaaacagaacttattagtatgatcatcatatattatgctttt---------------tttttggtaacaaaatacat |
38981632 |
T |
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| Q |
116 |
ttggagaggacaacactctaagtggccattaaaaagaga--aagtgataagaaaagagcacaatatactctcctcttttgtagatatgaacaaataatca |
213 |
Q |
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| T |
38981631 |
ttggagaggacaacactctaagtggccattaaaaagagagaaagtgataagaaaagagcacaatatactctcctcttttgtagatatgaacaaataatca |
38981532 |
T |
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