View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_high_11 (Length: 455)

Name: NF3116_high_11
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_high_11
NF3116_high_11
[»] chr1 (8 HSPs)
chr1 (17-439)||(24310270-24310695)
chr1 (17-432)||(24322842-24323249)
chr1 (17-359)||(24415927-24416257)
chr1 (17-432)||(24340484-24340893)
chr1 (17-432)||(24352849-24353258)
chr1 (17-192)||(24367472-24367644)
chr1 (227-333)||(24367334-24367440)
chr1 (398-432)||(24415851-24415885)
[»] chr5 (6 HSPs)
chr5 (77-349)||(42561975-42562235)
chr5 (75-142)||(9120117-9120184)
chr5 (246-334)||(29696401-29696489)
chr5 (92-142)||(179412-179462)
chr5 (152-191)||(29712161-29712200)
chr5 (78-130)||(29696602-29696654)
[»] chr4 (26 HSPs)
chr4 (78-339)||(49040795-49041046)
chr4 (77-142)||(7878737-7878802)
chr4 (78-191)||(48863573-48863683)
chr4 (77-135)||(7790441-7790499)
chr4 (77-135)||(7908663-7908721)
chr4 (77-142)||(7773467-7773532)
chr4 (77-187)||(48852993-48853100)
chr4 (227-351)||(48863401-48863525)
chr4 (74-142)||(49043807-49043875)
chr4 (78-137)||(48156072-48156131)
chr4 (77-135)||(7813838-7813896)
chr4 (77-130)||(7771761-7771814)
chr4 (80-137)||(48147358-48147415)
chr4 (246-339)||(49043994-49044087)
chr4 (77-129)||(50666682-50666734)
chr4 (77-136)||(48864395-48864454)
chr4 (77-136)||(49038520-49038579)
chr4 (77-135)||(7800998-7801056)
chr4 (85-191)||(48903260-48903366)
chr4 (77-142)||(45371716-45371781)
chr4 (257-334)||(48705198-48705275)
chr4 (78-130)||(7237386-7237438)
chr4 (77-135)||(7786825-7786883)
chr4 (91-137)||(45384548-45384594)
chr4 (77-126)||(37826632-37826681)
chr4 (74-142)||(49048194-49048262)
[»] chr3 (5 HSPs)
chr3 (78-137)||(11015134-11015193)
chr3 (78-135)||(11024146-11024203)
chr3 (78-135)||(11005571-11005628)
chr3 (105-142)||(47451570-47451607)
chr3 (258-339)||(47451717-47451798)
[»] chr7 (1 HSPs)
chr7 (77-142)||(48884178-48884243)
[»] chr6 (3 HSPs)
chr6 (91-130)||(21979284-21979323)
chr6 (80-142)||(21016175-21016237)
chr6 (299-351)||(21015978-21016030)
[»] chr8 (1 HSPs)
chr8 (91-135)||(15349244-15349288)


Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 24310695 - 24310270
Alignment:
Q  17 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaggactgcactttgtattct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24310695 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaagactgcactttgtattct 24310596  T
Q  117 ttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310595 ttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaa 24310496  T
Q  217 tatcatcatcat---catctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagc 313  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310495 tatcatcatcatgatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagc 24310396  T
Q  314 caaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatttcg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310395 caaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatttcg 24310296  T
Q  414 ttgcacacattagctctcattgaaaa 439  Q
    ||||||||||||||||||||||||||    
T  24310295 ttgcacacattagctctcattgaaaa 24310270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 24323249 - 24322842
Alignment:
Q  17 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaggactgcactttgtattct 116  Q
    ||||||||||||||||||||||||||||||||||| |  |  ||||||| ||||||||| ||||||||||||| || |||| ||||||||||||||||||    
T  24323249 aatatcaccactttttgtacaacatacaagggaaacgccatgaatggtaagcaaatcaagaacaagagttttagtcgaagatgactgcactttgtattct 24323150  T
Q  117 ttcatca----cccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatat 212  Q
    |||||||    ||||||||||||||||| ||  ||||  || ||||||||||||| |||||||||||||||||||||||| | ||||| ||||| ||       
T  24323149 ttcatcacccacccatatatcaactttacccaagtcctccaaaacccatagactgggaaatcctctaaatacccataaaccataatctttcgaaaca--- 24323053  T
Q  213 tcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatag 312  Q
    |||||         ||||||| ||| |||||| |||| || | | ||||| |||| || ||||| |||| ||| ||||||   | ||||| |||  | ||    
T  24323052 tcaat---------atcatctaggaaaggaatctctacaaattttctttccattagatcaaaggcaacagtaagatactcatgtgcatcaggacttaaag 24322962  T
Q  313 ccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcacta-taaaaaggtaaatgtgcaggactcacaattt 411  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||  || |||||||| | ||||  ||||||| ||||||| ||||| ||||||||    
T  24322961 ccaaccagtgaatagccccgttgaagaccgactctaccacagaataagtgaagggagaaag-ttactacaaaaaaggcaaatgtgtaggacccacaattt 24322863  T
Q  412 cgttgcacacattagctctca 432  Q
    |||| ||| ||||||||||||    
T  24322862 cgttccacgcattagctctca 24322842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 24416257 - 24415927
Alignment:
Q  17 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaggactgcactttgtattct 116  Q
    |||||||||||||||||||||||| |   ||||||||  || |||||||| ||  |  | ||||||||||||| ||||||| |||||| |||||||||||    
T  24416257 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgccctttgtattct 24416158  T
Q  117 ttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaa 216  Q
    ||||||||||||||||||||| ||||||    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || | | ||||||    
T  24416157 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaa 24416058  T
Q  217 tatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaa 316  Q
    |         ||||  |||||||||||| ||||||||| |||||||  ||||||||||||   ||| ||   | ||   ||  |||||||| | ||| ||    
T  24416057 t---------atcacttgggagaggaatctctagaagtttcctttccgttaaatgaaaggctgcaacaaagaaatc---tatctcatgacggaaagctaa 24415970  T
Q  317 ccagtgaatagccccattgaagacggactctaccacagaataa 359  Q
    ||| |||||||||||||||||||| ||||||||||||| ||||    
T  24415969 ccaatgaatagccccattgaagaccgactctaccacaggataa 24415927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 24340893 - 24340484
Alignment:
Q  17 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatca---aaaacaagagttttactccaagaggactgcactttgtat 113  Q
    ||||||||||||| |||||||||||||||||||||  | |  ||||||||   ||  |   | ||||||||||||| ||||||| ||||||||||| |||    
T  24340893 aatatcaccacttgttgtacaacatacaagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatat 24340794  T
Q  114 tctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatatt 213  Q
    |||||||| ||||| ||||||||  ||||||| |||  ||||||||||||||| |||||||||||| |||||||||||| |||| | ||  ||||||  |    
T  24340793 tctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggt 24340694  T
Q  214 caatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagc 313  Q
    |||          |||||||||||||||||| |||| |||| ||||||| | ||| | ||||| ||||| || ||| ||   |  ||||| |   | |||    
T  24340693 caa---------aatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagc 24340603  T
Q  314 caaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatttcg 413  Q
    ||||||||||||||| || |||||||| |||||||| |  | |||| |||| |||||   || |||| ||||||| ||||| | ||| ||||||||||||    
T  24340602 caaccagtgaatagctccgttgaagaccgactctactaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatttcg 24340503  T
Q  414 ttgcacacattagctctca 432  Q
    || ||| ||||||||||||    
T  24340502 ttccacgcattagctctca 24340484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 24353258 - 24352849
Alignment:
Q  17 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatca---aaaacaagagttttactccaagaggactgcactttgtat 113  Q
    ||||||||||||| |||||||||||||||||||||  | |  ||||||||   ||  |   | ||||||||||||| ||||||| ||||||||||| |||    
T  24353258 aatatcaccacttgttgtacaacatacaagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatat 24353159  T
Q  114 tctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatatt 213  Q
    |||||||| ||||| ||||||||  ||||||| |||  ||||||||||||||| |||||||||||| |||||||||||| |||| | ||  ||||||  |    
T  24353158 tctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggt 24353059  T
Q  214 caatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagc 313  Q
    |||          |||||||||||||||||| |||| |||| ||||||| | ||| | ||||| ||||| || ||| ||   |  ||||| |   | |||    
T  24353058 caa---------aatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagc 24352968  T
Q  314 caaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatttcg 413  Q
    ||||||||||||||| || |||||||| |||||||| |  | |||| |||| |||||   || |||| ||||||| ||||| | ||| ||||||||||||    
T  24352967 caaccagtgaatagctccgttgaagaccgactctactaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatttcg 24352868  T
Q  414 ttgcacacattagctctca 432  Q
    || ||| ||||||||||||    
T  24352867 ttccacgcattagctctca 24352849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 24367644 - 24367472
Alignment:
Q  17 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaggactgcactttgtattct 116  Q
    |||||||||| ||||||||||||||| | || |||||  || |||||||| || |   | ||||||||||||| ||||||| || |||||||||||||||    
T  24367644 aatatcaccagtttttgtacaacatatagggaaaatgcgaggaatggtatccatagttagaacaagagttttagtccaagacgaatgcactttgtattct 24367545  T
Q  117 ttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaac 192  Q
    | ||| |||||||||| || | ||| |||   ||||| ||||||||||||||||||||||||||||||||||||||    
T  24367544 tccattacccatatataaagtgtat-ctc--tcctcaaaacccatagactgagaaatcctctaaatacccataaac 24367472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 24367440 - 24367334
Alignment:
Q  227 atcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaata 326  Q
    |||| ||||||||||||| || |||||| ||||||| |||||| |||||| |||||||||||   | | || ||||| ||||| || |||||||||||||    
T  24367440 atcaactgggagaggaatatcgagaagtttcctttccattaaaagaaaggcaacaataacattgacacgtatatcataacgaaaagtcaaccagtgaata 24367341  T
Q  327 gccccat 333  Q
    |||||||    
T  24367340 gccccat 24367334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 432
Target Start/End: Complemental strand, 24415885 - 24415851
Alignment:
Q  398 aggactcacaatttcgttgcacacattagctctca 432  Q
    |||||||||||||||||| ||||||||||||||||    
T  24415885 aggactcacaatttcgttccacacattagctctca 24415851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 42561975 - 42562235
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 176  Q
    ||||||| | ||| ||||||| || ||||||||||||||||||||||||||||||||||| |||   |||||||||| || |||||||||||||||||||    
T  42561975 aacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacatta---tcgtccctcaaaatccatagactgagaaatcct 42562071  T
Q  177 ctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaagg 276  Q
    ||||||||||| |||| |||| || | |||  ||| | |||||||  ||       ||| ||| |||| ||||||||| |||||||  ||||||||||||    
T  42562072 ctaaatacccaaaaaccacaacctttggaattataattaatatca--at-------tggaagaagaatctctagaagtttcctttccgttaaatgaaagg 42562162  T
Q  277 aaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaagacggactctac 349  Q
     |||||||||||  ||  ||| ||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  42562163 caacaataacatggtcatatatatcatgacgaagagccaaccagtgaatagccccattgaagaacgactctac 42562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 9120184 - 9120117
Alignment:
Q  75 aaaacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  9120184 aaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatc 9120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 29696489 - 29696401
Alignment:
Q  246 tctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccatt 334  Q
    ||||||||| ||||||||||||||||||||| ||||||||||  |    ||| ||||| ||||| ||||||||||||||||||||||||    
T  29696489 tctagaagtttcctttcaattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagccccatt 29696401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 179462 - 179412
Alignment:
Q  92 ccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    |||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 29712161 - 29712200
Alignment:
Q  152 cataacccatagactgagaaatcctctaaatacccataaa 191  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  29712161 catatcccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 29696654 - 29696602
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatat 130  Q
    |||||||| ||| |||||||||| ||||| ||||||| || ||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatat 29696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 339
Target Start/End: Original strand, 49040795 - 49041046
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctc 177  Q
    |||||| ||||| ||||||| || ||||||   ||||||| ||||||||||||||||||  |||  ||   || |  ||||||||||||||||||||||     
T  49040795 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatgatc---ccccgaaacccatagactgagaaatcctt 49040891  T
Q  178 taaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttca-attaaatgaaagg 276  Q
    ||||||||||||||  || |||  | ||| ||| ||||||||||||         ||||||||| ||   |||||||  ||||||  |||||||||||||    
T  49040892 taaatacccataaatcacgatcattagaatcattttcaatatcatc---------tgggagaggtatcaatagaagttccctttcctattaaatgaaagg 49040982  T
Q  277 a-aacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 339  Q
    | ||||||||||||  | |||| ||||||||||| ||||||||| ||||||||||| |||||||    
T  49040983 acaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaaga 49041046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 7878802 - 7878737
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  7878802 aacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 7878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 48863683 - 48863573
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctc 177  Q
    |||||||||||| ||||||| || ||||||  |||||||| |||||||||||| ||||| ||||  ||   || |  |||||||||||||||| ||||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaaccttatgatc---ccccgaaacccatagactgagagatcctc 48863587  T
Q  178 taaatacccataaa 191  Q
    ||||||||||||||    
T  48863586 taaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 7790499 - 7790441
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||    
T  7790499 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 7908721 - 7908663
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||    
T  7908721 aacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 7773467 - 7773532
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  7773467 aacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 7773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 48853100 - 48852993
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 176  Q
    ||||||||| ||| ||||||| ||  ||||||||||||||||||| |||||||| |||||| ||   || |||| ||| ||||||| ||| |||||| ||    
T  48853100 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta---tcatcccccatgacccatatacttagaaattct 48853004  T
Q  177 ctaaataccca 187  Q
    |||||||||||    
T  48853003 ctaaataccca 48852993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 351
Target Start/End: Complemental strand, 48863525 - 48863401
Alignment:
Q  227 atcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaata 326  Q
    ||||||| ||||||| ||   |||||||  ||||||  ||||| |||||| ||||||||||||  | | || ||||||||||| ||||||||| ||||||    
T  48863525 atcatctaggagaggtatcaatagaagttccctttccgttaaacgaaaggcaacaataacataaacacctatatcatgacgaaaagccaaccaatgaata 48863426  T
Q  327 gccccattgaagacggactctacca 351  Q
    ||||| ||||||| ||| |||||||    
T  48863425 gccccgttgaagaaggagtctacca 48863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 49043807 - 49043875
Alignment:
Q  74 aaaaacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    |||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||||| ||||    
T  49043807 aaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatc 49043875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 48156072 - 48156131
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaact 137  Q
    |||||||||||| ||||||| || |||||||||||||| |||||||||||||| ||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaact 48156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 7813896 - 7813838
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||| ||||||| || ||||||||||||||||||| ||||||||| ||||    
T  7813896 aacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 7771814 - 7771761
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatat 130  Q
    ||||||||||||| |||| || || |||||||||||||||||||||||||||||    
T  7771814 aacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 48147358 - 48147415
Alignment:
Q  80 aagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaact 137  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||||||| ||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 49043994 - 49044087
Alignment:
Q  246 tctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 339  Q
    |||| |||| ||||||||||||||| ||||| ||||||||||| |    ||| |||| || ||| |||||||||||||||||||||||| ||||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaaga 49044087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccata 129  Q
    ||||||||||||| ||||||| || |||||||||||||||| |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 48864454 - 48864395
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaac 136  Q
    ||||||| | ||| ||||||| || ||||||||||||||||||||||||||||| |||||    
T  48864454 aacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 49038520 - 49038579
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaac 136  Q
    ||||||||| ||| ||||||| || || |||||||||||||||||||||||||| |||||    
T  49038520 aacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 7801056 - 7800998
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||| ||||||| || ||||||||||| ||||||| ||||||||| ||||    
T  7801056 aacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 48903366 - 48903260
Alignment:
Q  85 ttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatac 184  Q
    ||||| |||||||  | ||||||||||||||||||||||||||||| |||| |||||  ||||    || | ||||||| || |||||| ||| ||||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaatac 48903267  T
Q  185 ccataaa 191  Q
    |||||||    
T  48903266 ccataaa 48903260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 45371716 - 45371781
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    ||||| ||| ||| ||||||| || |||||||||||||||||||| |||||||| |||||| ||||    
T  45371716 aacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 48705198 - 48705275
Alignment:
Q  257 cctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccatt 334  Q
    |||||| ||||||| ||||| ||||||||||| ||  | || ||||||||||  ||||||||| ||||||||||||||    
T  48705198 cctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccatt 48705275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatat 130  Q
    |||||||||||| ||||| | || |||| ||||||||||||||||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 7786883 - 7786825
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||| ||| |||||||  | ||||| ||||||||||||||||||||||| ||||    
T  7786883 aacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 45384548 - 45384594
Alignment:
Q  91 tccaagaggactgcactttgtattctttcatcacccatatatcaact 137  Q
    ||||||| || |||||||| |||||||||||||||||||| ||||||    
T  45384548 tccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcaccc 126  Q
    ||||||||| ||| ||||||| || |||| ||||||||||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 49048194 - 49048262
Alignment:
Q  74 aaaaacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    |||||||| ||| ||| |||| || || |||||||| || ||||||||||||||||| |||||| ||||    
T  49048194 aaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatc 49048262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 11015134 - 11015193
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaact 137  Q
    ||||||||||||  |||||| || |||||||||||||||||||| |||||||| ||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaact 11015193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    |||||||| ||| ||||||| || |||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 11005571 - 11005628
Alignment:
Q  78 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    |||||||  ||| ||||||| || |||||||||||||||||||| |||||||| ||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 47451570 - 47451607
Alignment:
Q  105 actttgtattctttcatcacccatatatcaactttatc 142  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  47451570 actttgtattctttcatcacccatatttcaactatatc 47451607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 47451717 - 47451798
Alignment:
Q  258 ctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 339  Q
    ||||| ||||||| ||| | | ||||||||| |  | ||| ||||||||||| ||||||||| | |||||||||||||||||    
T  47451717 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaaga 47451798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 48884243 - 48884178
Alignment:
Q  77 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    ||||||||| ||| |||||||    |||||||||||||||||||||||| |||| |||||||||||    
T  48884243 aacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatc 48884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 21979284 - 21979323
Alignment:
Q  91 tccaagaggactgcactttgtattctttcatcacccatat 130  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  21979284 tccaagaggaacgcactttgtattctttcatcacccatat 21979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 21016237 - 21016175
Alignment:
Q  80 aagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 142  Q
    |||||| ||| ||||||| || || ||||||||||||||||| |||||||| |||||| ||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatc 21016175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 21016030 - 21015978
Alignment:
Q  299 atcatgacgaatagccaaccagtgaatagccccattgaagacggactctacca 351  Q
    ||||||||||| ||||||||| |||||||||||||| || || ||| ||||||    
T  21016030 atcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctacca 21015978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 15349288 - 15349244
Alignment:
Q  91 tccaagaggactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||| || | ||||||||||||||||||||||||||| ||||    
T  15349288 tccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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