View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_15 (Length: 403)
Name: NF3116_high_15
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 44987667 - 44987292
Alignment:
| Q |
10 |
aagaatatccagatatcaaaccgttccatgaaaatgcatctggctcactaatatctttaaaagctctatttgcatcgtgaatactaccacatttgctgta |
109 |
Q |
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| T |
44987667 |
aagaaaatccagatatcaaaccgttccatgaaaatgcatctggctcactaatatctttaaaagctctatttgcatcgtgaatactaccacatttgctgta |
44987568 |
T |
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| Q |
110 |
caagtgaactaagctgtttgaaactgagtgacatctctggaagcctgatttgacagaataacaatgcagctgctttccagtttccatagtgcctaagcca |
209 |
Q |
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| T |
44987567 |
caagtgaactaagctgtttgaaactgagtgacatctctggaagcctgatttgacagaataacaatgcagctgctttccagtttccatagtgcctaagcca |
44987468 |
T |
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| Q |
210 |
gctgcagctgataagaaacttgccaagctaaattcatccattttaatcccatcattgcacatgtgaatcaaaacttttaatgctattccatgatgcccct |
309 |
Q |
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| T |
44987467 |
gctgcagctgataagaaacttgccaagctaaattcatccattttaatcccatcattgcacatgtgaatcaaaacttttaatgccattccatgatgcccct |
44987368 |
T |
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| Q |
310 |
tctggtttagccttgcggctaaacatgtgtacgtgattgaatctctaagattcattgtaccaattacagaccatgc |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44987367 |
tctggtttagccttgcggctaaacatgtgtacgtgattgaatctctaagattcattgtaccaattacagaccatgc |
44987292 |
T |
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