View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_17 (Length: 378)
Name: NF3116_high_17
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 33 - 361
Target Start/End: Original strand, 41184893 - 41185219
Alignment:
| Q |
33 |
cttaatttaaactcatacgttgttgaatactcaataaatataagatgtagaataaacccttataactttattttcaatccaggatcacacccaaaagctt |
132 |
Q |
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| T |
41184893 |
cttaatttaaactcatacgttgttgaatactcaataaatagaagttgtagattaaacccttg--actttattttcaatccaggatcacacccaaaagctt |
41184990 |
T |
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| Q |
133 |
tatcaaatcatcaagaggaaatttaggcttatctttattacaaaaaataatttaataatgttgtttccaaataattcacaaacaaatcattcatattcac |
232 |
Q |
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| T |
41184991 |
tatcaaatcatcaagaggaaatttaagcctatcttgattacaaaaaataatttaataatgttgtttccaaataattcacaaacaagtcattcatattccc |
41185090 |
T |
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| Q |
233 |
aaacagtatttgaaaacaccgttgcagaagtgaaatcagcccaaagatattgacaacttcagttgtattaagttttattttaaaattgggactaaacaaa |
332 |
Q |
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| T |
41185091 |
aaacagtatttgaaaacatcgttgcagaagtgaaatcaatccaaagatattgacaacttcgattgtgttgtgttttattttaaaattgggactaaacaaa |
41185190 |
T |
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| Q |
333 |
ttgtagagtaagagattggacaaaaattg |
361 |
Q |
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| T |
41185191 |
ttatagagtaaaagatggaacaaaaattg |
41185219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 17803039 - 17803079
Alignment:
| Q |
240 |
atttgaaaacaccgttgcagaagtgaaatcagcccaaagat |
280 |
Q |
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| T |
17803039 |
atttgaaaacaccgttgcagaagtgaaatcagcccaaagat |
17803079 |
T |
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