View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_19 (Length: 362)
Name: NF3116_high_19
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 40465041 - 40464776
Alignment:
| Q |
19 |
ggaacagtactctatgttccaacaatatttgactttgacaatgcttg----tttgacaatgtaaccccaattgagtaagttc----------acttatta |
104 |
Q |
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| T |
40465041 |
ggaacagtactctatgttccaacaatatttgactttgacaatgcttgcttgtttgacaatgtaacctcaattgagtaagttccctttggttcacttatta |
40464942 |
T |
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| Q |
105 |
tagcaacaacttggcccacatgaatcttcatcctatattttactttgacctatcgcattcataaggactaatgctgaaaatgggaaatggaatcggtgcc |
204 |
Q |
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| T |
40464941 |
tagcaacaacttggcccacaagaatcttcatcctatatttgactttaacctatcgcattcataaggactaatgctgaaaatgggaaatggaatcggtgcc |
40464842 |
T |
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| Q |
205 |
gtaaaaaataacacaattgttatcccaacaattgaatgggtatgacaaagttacactaataccatc |
270 |
Q |
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| T |
40464841 |
gtaaaaaataacacaattaatatcccaaccattgaatgggtttgacaaagttacactaataccatc |
40464776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 40464495 - 40464398
Alignment:
| Q |
260 |
ctaataccatccaataactataactgaaaactgtgtgaaactgtgttgtttcactacagcagcaaaccctaatacttgaaaatgaagttcatctcact |
357 |
Q |
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| T |
40464495 |
ctaacaccatccaataactataactgaaaactgtgtgaaactatgttgtttcactacagcagcaaaccctaatccttgaaaatgaagttcaactcact |
40464398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 45482975 - 45482929
Alignment:
| Q |
284 |
tgaaaactgtgtgaaactgtgttgtttcactacagcagcaaacccta |
330 |
Q |
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| T |
45482975 |
tgaaaactgtgtgaaactgtgttgtttcactagagcagcaaatccta |
45482929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 50513201 - 50513278
Alignment:
| Q |
235 |
attgaatgggtatgacaaagttacactaataccatccaataactataactgaaaactgtgtgaaactgtgttgtttca |
312 |
Q |
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| T |
50513201 |
attgaatggatttgacaaagttataataatacgatccaatatctataattgaaaactctgtggaattgtgttgtttca |
50513278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 45167635 - 45167607
Alignment:
| Q |
297 |
aaactgtgttgtttcactacagcagcaaa |
325 |
Q |
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| T |
45167635 |
aaactgtgttgtttcactacagcagcaaa |
45167607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 13062493 - 13062447
Alignment:
| Q |
284 |
tgaaaactgtgtgaaactgtgttgtttcactacagcagcaaacccta |
330 |
Q |
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| T |
13062493 |
tgaaaattgtgcgaaattgtgttgtttcactacagcagcaaatccta |
13062447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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