View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_20 (Length: 361)
Name: NF3116_high_20
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 31075539 - 31075884
Alignment:
| Q |
19 |
cataatatgtacacaacaattatgaagtttag-------ggtttctaccaactgagctaagctcatgagaacaatgattgttgagtttatgcggctatga |
111 |
Q |
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| T |
31075539 |
cataatatgtacgcaacaattatgaagtttagagcttagggtttctaccaactgagctaagcgcacgagaacaatgattgttgagtttatgcggctatga |
31075638 |
T |
|
| Q |
112 |
taagtttaaagaaatatgaaaaaattcagtttccattgactcgtgaattttggtcgacttcaatttagttgtaccattcatcattcaaaacaatgggata |
211 |
Q |
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| T |
31075639 |
taagtttaaataaatatgaaaaaattcagtttccattgactcgtgaattttggtcgacttcaatttagttgtaccattcatcattcaaaacaatgggata |
31075738 |
T |
|
| Q |
212 |
caaaacaaaattcaaactaaggattgtgttaacttgaaagatctaaattggcatattcacaatttgtgtcttttgtaaaccatggaaatggtactaaaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31075739 |
caaaacaaaattcaaactaaggattgtgttaacttgaaagatctaaattggcatattcacaatttgtgtcttttgtaaaccatggaaatggtactaaaat |
31075838 |
T |
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| Q |
312 |
agtactccttccgtgtca--ttaagtgatcattttgttcatctcac |
355 |
Q |
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| T |
31075839 |
agtactccttccgtgccattttaagtgatcattttgttcatttcac |
31075884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 31091867 - 31091802
Alignment:
| Q |
195 |
ttcaaaacaatgggatacaaaacaaaa-ttcaaactaaggattgtgttaacttgaaagatctaaat |
259 |
Q |
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| T |
31091867 |
ttcaaaacaatgggatacaaaacaaaaattcaaacaaaggattgtgttaaattgaaagatttaaat |
31091802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 31040110 - 31040166
Alignment:
| Q |
203 |
aatgggatacaaaacaaaattcaaactaaggattgtgttaacttgaaagatctaaat |
259 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
31040110 |
aatgggatacaaaacaaaattcaaataaaggattgtgttaaattgaaagatttaaat |
31040166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 31039914 - 31039946
Alignment:
| Q |
165 |
tcgacttcaatttagttgtaccattcatcattc |
197 |
Q |
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| T |
31039914 |
tcgacttcaatttagttgtaccattcatcattc |
31039946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 49908232 - 49908260
Alignment:
| Q |
56 |
ctaccaactgagctaagctcatgagaaca |
84 |
Q |
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| T |
49908232 |
ctaccaactgagctaagctcatgagaaca |
49908260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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