View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_high_22 (Length: 334)

Name: NF3116_high_22
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_high_22
NF3116_high_22
[»] chr5 (14 HSPs)
chr5 (12-311)||(37430280-37430579)
chr5 (23-205)||(37698327-37698509)
chr5 (46-205)||(37391385-37391544)
chr5 (36-149)||(37595877-37595990)
chr5 (36-205)||(37641428-37641597)
chr5 (36-205)||(37713171-37713340)
chr5 (29-144)||(37704208-37704323)
chr5 (64-221)||(37411734-37411891)
chr5 (34-138)||(37825458-37825562)
chr5 (37-205)||(37534648-37534816)
chr5 (63-144)||(37441518-37441599)
chr5 (36-205)||(37437248-37437417)
chr5 (46-141)||(37380831-37380926)
chr5 (56-138)||(37399314-37399396)
[»] chr4 (2 HSPs)
chr4 (23-141)||(24216245-24216363)
chr4 (37-144)||(16841384-16841491)
[»] chr3 (1 HSPs)
chr3 (46-141)||(14554616-14554711)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 37430280 - 37430579
Alignment:
Q  12 gaggagcagagagaccaaaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattg 111  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||    
T  37430280 gaggaacagtgagaccaaaaaccaggttgagatgaagtgttgataaaaaatgaattcttgaattgtaacaaggcagaactgtcatgatgcttgcacattg 37430379  T
Q  112 agaatgtataggaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaatt 211  Q
    | |||||||||||||||||| |||| ||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37430380 aaaatgtataggaagtaaaaagagttagcagcatcaacaagaacaagtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaact 37430479  T
Q  212 atactctcttgtttaggattttggatttgattattttagcctatatctatagaggttatgaagaggtttgaaagatgcagaagcatgacctacaaagcat 311  Q
    |||||||||| || ||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  37430480 atactctcttcttgaggattttttatttgattattttagcctctatctatagatgttatgaagaggtttgaaagatgcagaagcatgacctactaagcat 37430579  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 37698327 - 37698509
Alignment:
Q  23 agaccaaaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtatag 122  Q
    |||||||| | ||||||||||  ||||||| |   |||||||||| |||||||||||||||||||||||||||| ||||||| | | ||||| ||| |||    
T  37698327 agaccaaatatcaggttgagacgaagtgttaactgaaaatgagtttttgaattgtaacaaggcagaactgtcatgatggttgcataatgagagtgtgtag 37698426  T
Q  123 gaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 205  Q
    ||||||||||||||||||| || ||||        ||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  37698427 gaagtaaaatgagtaagcaacaacaacaagaaaaagtgaaaggcaaaataaggcaatagaataaaaaaggaccccatttagag 37698509  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 37391544 - 37391385
Alignment:
Q  46 aagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagcagcat 145  Q
    ||||||||| |||||||||||| |||||||||| ||||||||| || |||| | ||||| ||| |||||  ||||||||||||||||||||||||| ||     
T  37391544 aagtgttgacaaaaaatgagtttttgaattgtagcaaggcagagctatcatgaaggttgcacaatgagagagtataggaagtaaaatgagtaagcaacaa 37391445  T
Q  146 caacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 205  Q
    ||||        |||||||| || |||||| |||| || | | |||||||||||||||||    
T  37391444 caacatgaacaagtgaaaggtaaaataaggcaataaaataaacaaggaccccatttagag 37391385  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 37595877 - 37595990
Alignment:
Q  36 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 135  Q
    ||||||||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || ||||||||||||||||    
T  37595877 ggttgagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacaatgagaaagtgtaggaagtaaaatgag 37595976  T
Q  136 taagcagcatcaac 149  Q
    ||||||||| ||||    
T  37595977 taagcagcaacaac 37595990  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 37641428 - 37641597
Alignment:
Q  36 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 135  Q
    |||| |||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  |||||| ||| |||||| || ||||||||||||||||    
T  37641428 ggtttagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagaggtgtcatgttggttgcacagtgagaaagtgtaggaagtaaaatgag 37641527  T
Q  136 taagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 205  Q
    ||| || || ||||        |||||||| || |||||| ||| ||| | ||||||| |||||||||||    
T  37641528 taatcaacaacaacaacaagaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagag 37641597  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 37713171 - 37713340
Alignment:
Q  36 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 135  Q
    ||||||||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || | ||||||||||||||    
T  37713171 ggttgagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgag 37713270  T
Q  136 taagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 205  Q
    |||||| || ||||        |||||||| || |||||| ||| ||| | ||||||| |||||||||||    
T  37713271 taagcaacaacaacgagaagaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagag 37713340  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 37704208 - 37704323
Alignment:
Q  29 aaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagta 128  Q
    |||||| |||| |||| ||||||||| | |||||||||  ||||||||||||||||| || || ||||  ||| || ||| |||||| || |||||||||    
T  37704208 aaaaccgggtttagatgaagtgttgacagaaaatgagtgtttgaattgtaacaaggcggagctatcatgttggctgcacaatgagaaagtgtaggaagta 37704307  T
Q  129 aaatgagtaagcagca 144  Q
    ||||||||||||||||    
T  37704308 aaatgagtaagcagca 37704323  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 37411891 - 37411734
Alignment:
Q  64 agttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaa 163  Q
    ||||||||||||||||||||||| | ||||||| || |||| | | |||||| || ||||||||||||||||||| ||||| ||||        ||||||    
T  37411891 agttcttgaattgtaacaaggcaaagctgtcatgatagttgcataatgagaaggtgtaggaagtaaaatgagtaaacagcagcaacaagaacaagtgaaa 37411792  T
Q  164 ggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaattatactctctt 221  Q
    || || ||| |  ||||||| | || |||||||||||||||| || ||| ||||||||    
T  37411791 ggtaaaataggacaatagaacaaaacaggaccccatttagagcaacttaaactctctt 37411734  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 37825458 - 37825562
Alignment:
Q  34 caggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatg 133  Q
    |||||| |||| ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || ||||||||||||||    
T  37825458 caggtttagatgaagtgttgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatg 37825557  T
Q  134 agtaa 138  Q
    |||||    
T  37825558 agtaa 37825562  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 37534648 - 37534816
Alignment:
Q  37 gttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagt 136  Q
    |||||||| ||||| ||| | |||| ||||| ||||||||||||||||||||  ||||||  | |||| ||| |||||| || |||||||||||||||||    
T  37534648 gttgagatgaagtgctgacagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatgagt 37534747  T
Q  137 aagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 205  Q
    || || || ||||        |||||||| || |||||| ||| ||| | ||||||| |||||||||||    
T  37534748 aatcaacaacaacaagaaaaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagag 37534816  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 37441518 - 37441599
Alignment:
Q  63 gagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagcagca 144  Q
    ||||| ||||||||||||||||||||  ||||||  | |||  ||| |||||| ||||||||||||||||||||||||||||    
T  37441518 gagtttttgaattgtaacaaggcagaggtgtcatgtttgtttcacagtgagaaagtataggaagtaaaatgagtaagcagca 37441599  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 37437248 - 37437417
Alignment:
Q  36 ggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgag 135  Q
    ||||||||| ||||||||| || ||| ||||| ||||||||||| ||||||||  |||||| ||||||| | | |||||| || | || |||||| ||||    
T  37437248 ggttgagatgaagtgttgagaagaaaagagtttttgaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgag 37437347  T
Q  136 taagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag 205  Q
    |||||| || ||||        ||||| ||||| | |||| || |||| | |||||||||||||||||||    
T  37437348 taagcaacaacaacgagaacaagtgaagggcaaaacaaggcaaaagaataaaaaaggaccccatttagag 37437417  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 37380926 - 37380831
Alignment:
Q  46 aagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagca 141  Q
    ||||||||| | |||||||||| ||||| ||||||||||||||  | ||||  |||||| ||| |||||| || | ||||||||||||||||||||    
T  37380926 aagtgttgaaagaaaatgagtttttgaaatgtaacaaggcagatgtatcatgttggttgcacaatgagaaagtgtgggaagtaaaatgagtaagca 37380831  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 37399396 - 37399314
Alignment:
Q  56 aaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaa 138  Q
    ||||||||| || ||||||||||||||||||||  |||||| ||||||| | | |||||| || || ||||||||||||||||    
T  37399396 aaaaaatgaatttttgaattgtaacaaggcagaggtgtcatgatggttgcatagtgagaaagtgtatgaagtaaaatgagtaa 37399314  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 24216363 - 24216245
Alignment:
Q  23 agaccaaaaaccaggttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtatag 122  Q
    |||||||| | | |||| |||| ||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||| | | |||| | || ||     
T  24216363 agaccaaatatcgggttcagatgaagtgttgacaacaaatgagttcttgaattgtaacaatgcagaactgtcatgatggttgcagaatgagtaagtgtaa 24216264  T
Q  123 gaagtaaaatgagtaagca 141  Q
    |||||||||||||||||||    
T  24216263 gaagtaaaatgagtaagca 24216245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 16841491 - 16841384
Alignment:
Q  37 gttgagattaagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagt 136  Q
    |||||||| ||||||||| | |||||||||| ||||| |||||||| ||||| |||||||  |||||| | | ||| || || |  |||||||| |||||    
T  16841491 gttgagatgaagtgttgacagaaaatgagtttttgaaatgtaacaaagcagagctgtcatgttggttgcagaatgacaaagtgtgtgaagtaaagtgagt 16841392  T
Q  137 aagcagca 144  Q
    ||||||||    
T  16841391 aagcagca 16841384  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 14554616 - 14554711
Alignment:
Q  46 aagtgttgataaaaaatgagttcttgaattgtaacaaggcagaactgtcatcatggttggacattgagaatgtataggaagtaaaatgagtaagca 141  Q
    ||||||||| | |||| ||||| ||||||||||||||||||||  ||||||  |||||| ||| |||||| |||||||||||||||||||||||||    
T  14554616 aagtgttgacagaaaaagagtttttgaattgtaacaaggcagaggtgtcatgttggttgcacaatgagaaagtataggaagtaaaatgagtaagca 14554711  T

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