View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_29 (Length: 282)
Name: NF3116_high_29
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 267
Target Start/End: Original strand, 45729577 - 45729842
Alignment:
| Q |
2 |
cttattgtgaaagagaaattttcatcttttactgtaaacgccattgttttgcttacggttggagctggtgttttggctatgcatacgagtagtgatcgtc |
101 |
Q |
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| T |
45729577 |
cttattgtgaaagagaaatttacagcttttactgtaaacgccgttgttttgcttacggttggagctggtgttttggctatgcatacgagtagtgatcgtc |
45729676 |
T |
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| Q |
102 |
ctgctggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggttgagttggttta |
201 |
Q |
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| T |
45729677 |
ctgctggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggttgagttggttta |
45729776 |
T |
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| Q |
202 |
taagaagattaaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtt |
267 |
Q |
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| T |
45729777 |
taagaagattaaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtt |
45729842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 45725392 - 45725653
Alignment:
| Q |
6 |
ttgtgaaagagaaattttcatcttttactgtaaacgccattgttttgcttacggttggagctggtgttttggctatgcatacgagtagtgatcgtcctgc |
105 |
Q |
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| T |
45725392 |
ttgtgaaacagaaatttacagcatttaccgtaaacgccgtttttttgcttactgttggtgctggtgttttggctatgcatacgagtagtgatcgtcctgc |
45725491 |
T |
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| Q |
106 |
tggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggttgagttggtttataag |
205 |
Q |
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| T |
45725492 |
tggtgtttctgcaaaacaatatgcgattggtttttcaaccacggttgctgcatctgcattgtatggatttgttttgcctgcggttgagttggtttataag |
45725591 |
T |
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| Q |
206 |
aagattaaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtt |
267 |
Q |
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| T |
45725592 |
aagattaaacaacccatcacttattctcttgttatggaatttcagttcgttatgtgcatgtt |
45725653 |
T |
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