View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3116_high_30 (Length: 278)
Name: NF3116_high_30
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 32378776 - 32379026
Alignment:
| Q |
18 |
tgtgtgtgtaagtggttgtattataggataattgtgtttataaataaattctaattccatcctagttgttataagttgtaattacttctgtcccatcgaa |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32378776 |
tgtgtgtgtgagtggttgtattataggataattgtgtttataaataaattctaattccatcctagctgttataagttgtaattacttctgtcccatcgaa |
32378875 |
T |
|
| Q |
118 |
aatctctgcctagcaatgcttgaattagttaagtttataaataatatcttgagcatgcatgctcctattgcagtatataaccacaatgcattcttcaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32378876 |
aatctctgcctagcaatgcttgaattagttaagtttataaataatatcttgagcatgcatgctcctattgcagtatataaccacaatgcattcttcaact |
32378975 |
T |
|
| Q |
218 |
ccttcaatcgcataatttacaatagttcagctttctccgaaacaagaataa |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32378976 |
ccttcaatcgcataatttacaatagttcagctttctccaaaacaagaataa |
32379026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University