View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3116_high_36 (Length: 252)
Name: NF3116_high_36
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_36 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 32055225 - 32055452
Alignment:
| Q |
8 |
tgagatgaagacacattgatcgttttggagtaaatacaaacaaaacatgataatacaagataaaattgtattagataatccacgataatgaatacttgac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32055225 |
tgagaagaagacacattgatcgttttgggataaatacaaacaaaacataataatacaaaataaaattgtattagataatccacgttaatgaatacttgac |
32055324 |
T |
|
| Q |
108 |
cacttgacgcacaatgtgtatgcaaatttaaaagtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacattcattattttccaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32055325 |
cacttgacgcacaatgtgtatgcaaatttaaaagggtcccggccttatatatgttacatgaaaatccaaacaaattacaataa----cattattttccaa |
32055420 |
T |
|
| Q |
208 |
agggtttttcttaacctccctttgaaattttt |
239 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
32055421 |
agagtttttcttaacctccctttgaaattttt |
32055452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 230
Target Start/End: Original strand, 20996249 - 20996425
Alignment:
| Q |
41 |
atacaaacaaaacatgataatacaagataaaattgtattagataatccacgataatgaatacttgaccacttgacgcacaatgtgtatgcaaatttaaaa |
140 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||| | || || |||||| | | |||||| ||| |
|
|
| T |
20996249 |
atacaaacaaaacatgataataaaatataaaattgtattgcataatccacattaatgaatacatttcc---tg-----caatgt-tcttcaaattcaaag |
20996339 |
T |
|
| Q |
141 |
gtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacattcattattttccaaagggtttttcttaacctcccttt |
230 |
Q |
| |
|
| |||| || |||| ||||||||||| ||||| ||||||||||||||||| | |||| || ||||| |||||||||||||||||||| |
|
|
| T |
20996340 |
gagtcctagtcttagatatgttacataaaaatacaaacaaattacaataa----cgttatcttacaaagtgtttttcttaacctcccttt |
20996425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 8085937 - 8086105
Alignment:
| Q |
59 |
aatacaagataaaattgtattagataatccacgataatgaatacttgaccacttgacgcacaatgtgtatgcaaatttaaaagtgtcccagccttatata |
158 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| || || || |||||| |||||||||||||||| ||| || |||| ||| |
|
|
| T |
8085937 |
aatacaagataaaattatattagataatccacattaatgaataatttaca---tg-----caatgtatatgcaaatttaaaaggatcctagtcttacata |
8086028 |
T |
|
| Q |
159 |
tgttacatgaaaatccaaacaaattacaataacattcattattttccaaagggtttttcttaacctccctttgaaattttt |
239 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| |||||||| | || ||||||| ||||||||| |||||||| |
|
|
| T |
8086029 |
tgttacatgaaaatccaaacaaattagaataa----catcattttccagaatgtatttcttatcctccctttcaaattttt |
8086105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 30333218 - 30333144
Alignment:
| Q |
119 |
caatgtgtatgcaaatttaaaagtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacat |
193 |
Q |
| |
|
||||||||||| |||||| ||| |||| || |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30333218 |
caatgtgtatgataatttataagggtcctagtcttaaatatgttacatgaaaatccaaacaaattacaataacat |
30333144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 7580925 - 7580976
Alignment:
| Q |
36 |
agtaaatacaaacaaaacatgataatacaagataaaattgtattagataatc |
87 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
7580925 |
agtaaatacaaacaaaacatgataacataagataaaatcgtattagataatc |
7580976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 26511533 - 26511481
Alignment:
| Q |
38 |
taaatacaaacaaaacatgataatacaagataaaattgtattagataatccac |
90 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
26511533 |
taaatacaaccaaaacatgataatacaagataaaattgaataatataatccac |
26511481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 19828276 - 19828221
Alignment:
| Q |
49 |
aaaacatgataatacaagataaaatt---gtattagataatccacgataatgaata |
101 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
19828276 |
aaaacatgataatacaagataaaattgtagtattagataatccacattaatgaata |
19828221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University