View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_38 (Length: 250)
Name: NF3116_high_38
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 39475373 - 39475163
Alignment:
| Q |
36 |
tagtatagaaaaaatcatcgttaannnnnnnncaagaatagaaataaaccagaaagagaaaaatggaaaacaacgacatggaggatgtttaagagaattt |
135 |
Q |
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| T |
39475373 |
tagtatagaaaaaatcatcgttgaaattttttcaagaatagaaataaaccagaaagataaaaatggaaaccaacgacatgaaggatgtttaagagaattt |
39475274 |
T |
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| Q |
136 |
aacatggaaaacataaggaagtggtaactaaagaaatgtgaggggtgtcaatctttataaac---------tcgttagagtttaactaatctttgcaatc |
226 |
Q |
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| T |
39475273 |
aacatggaaaacataaggaagtggtaactaaagaaatgtgaggggtgtcaatctttataaactttgtgtcgttgttagagtttaactaatctttgcaatc |
39475174 |
T |
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| Q |
227 |
atcgttgacta |
237 |
Q |
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| T |
39475173 |
atcgttgacta |
39475163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 39474901 - 39474930
Alignment:
| Q |
170 |
aatgtgaggggtgtcaatctttataaactc |
199 |
Q |
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| T |
39474901 |
aatgtgaggggtgtcaatctttataaactc |
39474930 |
T |
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