View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_41 (Length: 249)
Name: NF3116_high_41
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 49654859 - 49655069
Alignment:
| Q |
25 |
ctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtc |
124 |
Q |
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| T |
49654859 |
ctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtc |
49654958 |
T |
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| Q |
125 |
ggggggctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgat |
224 |
Q |
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| T |
49654959 |
gggg--ctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgat |
49655056 |
T |
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| Q |
225 |
gttctaatagcct |
237 |
Q |
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| T |
49655057 |
gttctaatagcct |
49655069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 8551537 - 8551505
Alignment:
| Q |
135 |
ttttacatttagaagatcttagtcttaacactg |
167 |
Q |
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| T |
8551537 |
ttttacatttagaagatcttagtcttgacactg |
8551505 |
T |
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