View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_44 (Length: 247)
Name: NF3116_high_44
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 49654570 - 49654787
Alignment:
| Q |
20 |
caggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaac |
119 |
Q |
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| T |
49654570 |
caggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaac |
49654669 |
T |
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| Q |
120 |
ttacaacagattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcag |
219 |
Q |
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| T |
49654670 |
ttacaacagattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcag |
49654769 |
T |
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| Q |
220 |
tttcaatctacacctttg |
237 |
Q |
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|||||||||||||||||| |
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| T |
49654770 |
tttcaatctacacctttg |
49654787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 16486263 - 16486434
Alignment:
| Q |
66 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
165 |
Q |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
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| Q |
166 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
237 |
Q |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
16486434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 21816647 - 21816476
Alignment:
| Q |
66 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
165 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
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| Q |
166 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
237 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
21816476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
37 |
caagtgaatctcagccctacacgtcagcaatc |
68 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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