View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_high_48 (Length: 239)

Name: NF3116_high_48
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_high_48
NF3116_high_48
[»] chr2 (5 HSPs)
chr2 (58-221)||(41009834-41009997)
chr2 (1-40)||(41009811-41009850)
chr2 (66-153)||(1377709-1377794)
chr2 (1-41)||(37599768-37599808)
chr2 (1-41)||(16644092-16644132)
[»] chr5 (3 HSPs)
chr5 (58-109)||(32868291-32868342)
chr5 (1-42)||(30335564-30335605)
chr5 (1-41)||(22229482-22229522)
[»] chr3 (3 HSPs)
chr3 (66-116)||(12005556-12005606)
chr3 (57-115)||(25374964-25375022)
chr3 (1-41)||(25735164-25735204)
[»] chr8 (1 HSPs)
chr8 (1-41)||(31235922-31235962)
[»] chr4 (1 HSPs)
chr4 (1-41)||(24571836-24571876)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 41009834 - 41009997
Alignment:
Q  58 acaattacttttaatataatatcttattaaatttagttttacataattatttaacaaaagaaaattgtgtctctccgatatcgtgaatccagatccaccc 157  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41009834 acaattacttttaatattatttcttattaaatttagttttacataattatttaacaaaagaaaattgtgtctctccgatatcgtgaatccagatccaccc 41009933  T
Q  158 atatttacaatataatgtactatcaaacaaatgtaaagaatccaatgtcatcttagtgccctac 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41009934 atatttacaatataatgtactatcaaacaaatgtaaagaatccaatgtcatcttagtgccctac 41009997  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41009811 - 41009850
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatat 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41009811 ttttctttgtaattttgattgctacaattacttttaatat 41009850  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 1377709 - 1377794
Alignment:
Q  66 ttttaatataatatcttattaaatttagttttacataattatttaacaaaagaaaattgtgtctctccgatatcgtgaatccagatcc 153  Q
    |||||||||||| | ||||||||||||||||||  ||||||||| |||||  ||||||||||||| || | || |||| |||||||||    
T  1377709 ttttaatataattttttattaaatttagttttatttaattatttgacaaa--aaaattgtgtctcaccaacattgtgagtccagatcc 1377794  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37599768 - 37599808
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatata 41  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  37599768 ttttctttgtaattttggttgctacaattatttttaatata 37599808  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16644092 - 16644132
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatata 41  Q
    ||||||||||||||||||||||||||| || || |||||||    
T  16644092 ttttctttgtaattttgattgctacaactatttctaatata 16644132  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 32868342 - 32868291
Alignment:
Q  58 acaattacttttaatataatatcttattaaatttagttttacataattattt 109  Q
    ||||||| |||||||||||| ||||||||||||||||||||  |||||||||    
T  32868342 acaattatttttaatataatttcttattaaatttagttttatttaattattt 32868291  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30335564 - 30335605
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatatat 42  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  30335564 ttttctttgtaattttgattgctacaactatttttaatatat 30335605  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22229482 - 22229522
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatata 41  Q
    |||||||| |||||||| |||||||||||| ||||||||||    
T  22229482 ttttctttataattttggttgctacaattatttttaatata 22229522  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 12005556 - 12005606
Alignment:
Q  66 ttttaatataatatcttattaaatttagttttacataattatttaacaaaa 116  Q
    |||||||| ||| ||||||||||||||||||||  ||||||||| ||||||    
T  12005556 ttttaatacaatttcttattaaatttagttttatttaattatttgacaaaa 12005606  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 25375022 - 25374964
Alignment:
Q  57 aacaattacttttaatataatatcttattaaatttagttttacataattatttaacaaa 115  Q
    ||||| || |||||||||||  ||||||| |||||||| |||| |||||||||||||||    
T  25375022 aacaactatttttaatataacttcttattgaatttagtattacttaattatttaacaaa 25374964  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25735204 - 25735164
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatata 41  Q
    ||||||||||||||||| ||||||||| || ||||||||||    
T  25735204 ttttctttgtaattttggttgctacaactatttttaatata 25735164  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31235922 - 31235962
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatata 41  Q
    ||||||||||||||||| ||||||||| || ||||||||||    
T  31235922 ttttctttgtaattttggttgctacaactatttttaatata 31235962  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24571876 - 24571836
Alignment:
Q  1 ttttctttgtaattttgattgctacaattacttttaatata 41  Q
    ||||||||||||||||||||||||||  || ||||||||||    
T  24571876 ttttctttgtaattttgattgctacagctatttttaatata 24571836  T

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