View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_49 (Length: 238)
Name: NF3116_high_49
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 2458120 - 2457919
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458120 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgt |
2458021 |
T |
|
| Q |
120 |
aatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgccactcaagtc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458020 |
aatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgccactcaagtc |
2457921 |
T |
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| Q |
220 |
tc |
221 |
Q |
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|| |
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| T |
2457920 |
tc |
2457919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 3063298 - 3063496
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
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|||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | || |||||||||||||||||||| |
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| T |
3063298 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgag |
3063397 |
T |
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| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgccactca |
215 |
Q |
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| T |
3063398 |
tataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaacttcactgcatctgagccactca |
3063496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 2466747 - 2466543
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
| |
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|||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | || |||||||||||||||||| | |
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| T |
2466747 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctggg |
2466648 |
T |
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| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgccactcaa |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||| |||||| || |
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| T |
2466647 |
tataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacttcactgcatctgagccacttaa |
2466548 |
T |
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| Q |
217 |
gtctc |
221 |
Q |
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||||| |
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| T |
2466547 |
gtctc |
2466543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 2462699 - 2462501
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | || |||||||||||||||||| | |
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| T |
2462699 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctggg |
2462600 |
T |
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| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgccactca |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||| |||||||| |
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| T |
2462599 |
tataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacttcactgcatctgagccactca |
2462501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 2470069 - 2469874
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgt |
119 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||| || | ||||||||||||||| |||||||||| |
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| T |
2470069 |
cctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcacatccaatccgttgtgtgtttctccaaaccacctgagtgt |
2469970 |
T |
|
| Q |
120 |
aatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgccactca |
215 |
Q |
| |
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| |||||||||| || |||| |||||||| |||||| |||| | ||||| | ||| |||| |||||||||| |||| || ||| |||||||| |
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| T |
2469969 |
agtggccacacatttcaccattagcacatgaattactactataatcatagtagggtttttcatccacccacaacttcaccgcttctacgccactca |
2469874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 2474331 - 2474236
Alignment:
| Q |
29 |
tcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgtaatgg |
124 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
2474331 |
tcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataatgg |
2474236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 2471090 - 2471027
Alignment:
| Q |
23 |
ggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaa |
86 |
Q |
| |
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||||| || ||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaa |
2471027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 18016022 - 18015824
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
| |
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|||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | || |||||||||||||||||||| |
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| T |
18016022 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgag |
18015923 |
T |
|
| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgccactca |
215 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||| |
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| T |
18015922 |
tataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaacttcactgcatctgagccactca |
18015824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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