View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_high_54 (Length: 227)
Name: NF3116_high_54
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 19221592 - 19221779
Alignment:
| Q |
8 |
cttcaactattttaatcatctaaaatacatatggggcccggatccacgccattttattcttggctttatatttcttctactacattacaatctagaagag |
107 |
Q |
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| T |
19221592 |
cttcaactattttac-cacctaaaatacatatgggacccggatccacgccattttattcttggctttatatttcttctactacattacaatctagaagag |
19221690 |
T |
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| Q |
108 |
tttgaaattatttaattggaaaattttggaatcatatattatggaaatgttgtgcaaatacatcaattaaagcagaacctgtccaattc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19221691 |
tttgaaattatttaattggaaaattttggaatcatatattatggaaatgttgtgcaaatacatcaattaaagcagaacctgtcaaattc |
19221779 |
T |
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