View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_high_9 (Length: 469)

Name: NF3116_high_9
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_high_9
NF3116_high_9
[»] chr7 (7 HSPs)
chr7 (15-469)||(28812345-28812793)
chr7 (39-229)||(33419821-33420011)
chr7 (17-190)||(33490997-33491170)
chr7 (93-231)||(33412742-33412875)
chr7 (337-407)||(33420247-33420316)
chr7 (337-407)||(33413114-33413183)
chr7 (25-59)||(33412710-33412744)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Complemental strand, 28812793 - 28812345
Alignment:
Q  15 agtttctttgcagggaattggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812793 agtttctttgcagggaattggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctata 28812694  T
Q  115 tatgaccaaccttcttatgctcatcaagttagttcttgatccattgtttacatgatacttttaacctttactagctttctagtcgttcttgtgtttgatc 214  Q
    ||||||||||||||||||||||||||||||||||||||| |                     |||||||||||| |||||||||||||||||||||||||    
T  28812693 tatgaccaaccttcttatgctcatcaagttagttcttgacc---------------------aacctttactagttttctagtcgttcttgtgtttgatc 28812615  T
Q  215 taatactaatttgagggagataaaagagtagcatagaagatattaacatacaaacataattaatatcattaacaacaattgcataattggagtttagctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812614 taatactaatttgagggagataaaagagtagcatagaagatattaacatacaaacataattaatatcattaacaacaattgcataattggagtttagctt 28812515  T
Q  315 ttatttt---------------actcgtacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaat 399  Q
    | |||||               |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812514 taattttttgtacttttggtttactcatacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaat 28812415  T
Q  400 tcttgaatctatcaaagtagctgcagacagattatccaactcaacaaatttccttcagtttttgggaaga 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812414 tcttgaatctatcaaagtagctgcagacagattatccaactcaacaaatttccttcagtttttgggaaga 28812345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 33419821 - 33420011
Alignment:
Q  39 tgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctcat 138  Q
    |||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33419821 tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctcat 33419920  T
Q  139 caagttagttcttgatccattgtttacatgatacttttaacctttactagctttctagtcgttcttgtgtttgatctaatactaatttgag 229  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||| ||||||||||    
T  33419921 caagttagttcttgatccattatttacatgatacttttaatctttactagctctctaatcattcttgtgtttgatctaatgctaatttgag 33420011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 33490997 - 33491170
Alignment:
Q  17 tttctttgcagggaattggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatata 116  Q
    ||||||| |||| | ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||||||||||||    
T  33490997 tttctttacaggaatttggtgctgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatata 33491096  T
Q  117 tgaccaaccttcttatgctcatcaagttagttcttgatccattgtttacatgatacttttaacctttactagct 190  Q
    | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  33491097 taatcaaccttcttatgctcatcaagttagttcttgatccattatttacatgatacttttaatctttactagct 33491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 33412742 - 33412875
Alignment:
Q  93 tcaaggaagctacatttctatatatgaccaaccttcttatgctcatcaagttagttcttgatccattgtttacatgatacttttaacctttactagcttt 192  Q
    ||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||| ||||||  ||||||| |||||| ||||||||||| |    
T  33412742 tcaaggaagctacatttctatatataacca---ttcttatgctcatcaagttagttcttgatcaattgttggcatgata-ttttaatctttactagctct 33412837  T
Q  193 ctagtcgttcttgtgtttgatctaatactaatttgaggg 231  Q
    |||  | ||||||  ||||||||||||||||||||||||    
T  33412838 ctaacccttcttg-atttgatctaatactaatttgaggg 33412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 33420247 - 33420316
Alignment:
Q  337 ctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaattcttgaat 407  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||| ||||||||||| |||||||||||    
T  33420247 ctaaggtattcttccaacacttgatgaggatctccttatgtc-ttttacttgaaggatcaaattcttgaat 33420316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 33413114 - 33413183
Alignment:
Q  337 ctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaattcttgaat 407  Q
    |||||||||| |||||||  ||||||||||| |||||||||| |||| |  ||||||||||||||||||||    
T  33413114 ctaaggtatttttccaacacttgatgaggatctccttctgtc-ttttacaagaaggatccaattcttgaat 33413183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 33412710 - 33412744
Alignment:
Q  25 cagggaattggtgctgttgtgggagtcttgtctca 59  Q
    ||||||||||| |||||||||||||||||||||||    
T  33412710 cagggaattggagctgttgtgggagtcttgtctca 33412744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University