View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_11 (Length: 484)
Name: NF3116_low_11
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 41901443 - 41900992
Alignment:
| Q |
19 |
ggagaattgaaaaacaagctactatttgtttgggttcgtatactcgcttatgctgtaatatacataaaat---ttcctaacaactctattcgttaattaa |
115 |
Q |
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| T |
41901443 |
ggagaattgaaaaacaagctactatttgtttgggttcgtatactcgcttatgctgttttatacataaaatcatttcctaataactctattcgttaattaa |
41901344 |
T |
|
| Q |
116 |
tgtgtttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaagaagccccnnnnnnncaaggaactgaa |
215 |
Q |
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| T |
41901343 |
tgtgtttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggagaacaaccagaagcccctttttttcaaggaactgaa |
41901244 |
T |
|
| Q |
216 |
agaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatccggtagtt |
315 |
Q |
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| T |
41901243 |
agaagtgtggcacagtgtcaagaaaggaggaccgtattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatccggtagtt |
41901144 |
T |
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| Q |
316 |
cacttgtttttactaatattgt-ttttaaattaatgttaacagctttaatcacctcaaattgcagcccaatacatcaatttttaccgagccgtatgatcc |
414 |
Q |
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|||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41901143 |
cacttgtttttactaatattgttttttaaatcaatattaacagctttaatcacctcaaattgcagcccaatacatcaatttttaccgagccgtatgatcc |
41901044 |
T |
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| Q |
415 |
agtggacaagcgtgacaaggcattgggttagaacttatgcttcttatatttt |
466 |
Q |
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| T |
41901043 |
agtggacaagtgtgacaaggcattgggttagaacttatgcttcttatatttt |
41900992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 120 - 467
Target Start/End: Complemental strand, 41896303 - 41895939
Alignment:
| Q |
120 |
tttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaagaagccccnnnnnnncaaggaactgaaagaa |
219 |
Q |
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| T |
41896303 |
tttcatatatttattttaggatcaacataaatgtagagattctggttttaaatccttggagaacaataagaaacctctctttttcaaagaactgaaaaaa |
41896204 |
T |
|
| Q |
220 |
gtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatccggtagttcact |
319 |
Q |
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| T |
41896203 |
gtgtgggacactatcaagaaaggaggaccgtattctgcttcaaatacgttgctgatcgatgacaaaccatacaagtctttccttaatccggtaattcact |
41896104 |
T |
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| Q |
320 |
tgtttt------tactaatat-------tgtttttaaat-taatgttaacagctttaatcacctcaaattgcagcccaatacatca---atttttaccga |
402 |
Q |
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| T |
41896103 |
tgtttttctttatattaatataaaaaactgtttttgaatcaaatattaacagctttaatcacctcaaattgcagcccaatacatcaattatttttcctaa |
41896004 |
T |
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| Q |
403 |
gccgtatgatccagtggacaagcgtgacaaggcattgggttagaacttatgcttcttatatttta |
467 |
Q |
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| T |
41896003 |
gtcatatgatcctgaggacaaggatgacaaggcactgggttagaacttatgcttcttatatttta |
41895939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 41891246 - 41891125
Alignment:
| Q |
205 |
aaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgctta |
304 |
Q |
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|||||||| |||||||||||| | ||||||||||||| | |||||||||||||| ||||||||| | ||||||| || |||||||| |||||| |||| |
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| T |
41891246 |
aaggaactaaaagaagtgtgggatgatgtcaagaaaggatgtccatattctgcttcaaataccttgatgattgatgccagaccatacaggtccttcctta |
41891147 |
T |
|
| Q |
305 |
atccggtagttcacttgttttt |
326 |
Q |
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| T |
41891146 |
atccgttaatgcacatgttttt |
41891125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 34454209 - 34454271
Alignment:
| Q |
232 |
gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaag |
294 |
Q |
| |
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| T |
34454209 |
gtcaagaaaggaggtccatattctgcttctaatactttgatgattgatgacaaaccatacaag |
34454271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 41885185 - 41885112
Alignment:
| Q |
235 |
aagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatcc |
308 |
Q |
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| T |
41885185 |
aagaaaagaggcccatattctgcttctaatactttgatgattgatgacaaagcatataagtccttcattaatcc |
41885112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 41829477 - 41829544
Alignment:
| Q |
232 |
gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtcctt |
299 |
Q |
| |
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|||||||||||||| |||||||| |||| ||||| ||| | |||||||||||| |||| |||||||| |
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| T |
41829477 |
gtcaagaaaggaggctcatattctccttctaatactttgatgattgatgacaaagcatataagtcctt |
41829544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 41891064 - 41891019
Alignment:
| Q |
411 |
atccagtggacaagcgtgacaaggcattgggttagaacttatgctt |
456 |
Q |
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| T |
41891064 |
atccagaggacaagggtgacaaagcactgggttagaacttatgctt |
41891019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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