View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_16 (Length: 449)
Name: NF3116_low_16
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 37844444 - 37844878
Alignment:
| Q |
1 |
tgcatctttaccttgctatcttgtctcattagcatcaaaggctataacatattgtataagtttgatgtatcaaagaagaaaactattagtagtctaccat |
100 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37844444 |
tgcatcttcactttgctatcttgtctcattagcatcaaaggctataacatattgtataagtttgatgtatcaaagaagaaaactat--gtagtctaccat |
37844541 |
T |
|
| Q |
101 |
attgctaattatatgttgcatttgctatccaaaagttttatgattcttcaaactcagttccttcgtctaccaaattattaaccagtctcggaaaacaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844542 |
attgctaattatatgttgcatttgctatccaaaagttttatgattcttcaaactcagttccttcgtctaccaaattattaaccagtctcggaaaacaatt |
37844641 |
T |
|
| Q |
201 |
acagctcaggttcttccactggtggtaccgtagcaaaggatgccgttggcaatgatgtggttgcagcagaatggctaaagtcacatggacccggtgaccg |
300 |
Q |
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| T |
37844642 |
acagctcaggttcttccactggtggtaccgtagcaaaggatgccgttggcaatgatgtggttgcagcagaatggctaaagtcacatggacccggtgaccg |
37844741 |
T |
|
| Q |
301 |
tactcttacacaaggattaaaggtaagtgttcaattgcaaactggttagtgtgtctcc---ataagtcgttttcattagctattctagagagcttatgaa |
397 |
Q |
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| T |
37844742 |
tactcttacacaaggattaaaggtaagtgttcaattgcaaactggttagtgtgtctccattataagtcgttttcattagctattctagagagcttatgaa |
37844841 |
T |
|
| Q |
398 |
aatgacttatagataaacacttatatgataagctttt |
434 |
Q |
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| T |
37844842 |
aatgacttatagataaacacttatatgataagctttt |
37844878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 400
Target Start/End: Original strand, 10923604 - 10923638
Alignment:
| Q |
366 |
gttttcattagctattctagagagcttatgaaaat |
400 |
Q |
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| T |
10923604 |
gttttcattagctattctggagagcttatgaaaat |
10923638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 26473820 - 26473780
Alignment:
| Q |
360 |
taagtcgttttcattagctattctagagagcttatgaaaat |
400 |
Q |
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||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
26473820 |
taagttgttttcataagctatcctagagagcttatgaaaat |
26473780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 25479582 - 25479623
Alignment:
| Q |
359 |
ataagtcgttttcattagctattctagagagcttatgaaaat |
400 |
Q |
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|||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
25479582 |
ataagttgttttcataagctatcctagagagcttatgaaaat |
25479623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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