View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_17 (Length: 412)
Name: NF3116_low_17
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 30995490 - 30995113
Alignment:
| Q |
17 |
cacagagtgatctgaatcaaatggctgctgtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaag |
116 |
Q |
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| T |
30995490 |
cacagagtgatctgaatcaaatggctgctgtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaag |
30995391 |
T |
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| Q |
117 |
aaatgggatagctgcattaggtgataagctagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995390 |
aaatgggatagctgcattaggtgataagctagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaata |
30995291 |
T |
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| Q |
217 |
aacaatgctttatttaaagtagctttgatggagtctagagtaattgtccttcatgtaacccttcattttggtctacaagtacttcacttggctcaatcac |
316 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995290 |
aacaatgcattatttaaggtagctttgatggagtctagagtaattgtccttcatgtaacccttcattttggtctacaagtacttcacttggctcaatcac |
30995191 |
T |
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| Q |
317 |
atgaaatgatgggaagtggttatgcatggatagccactgattggctttctacgatactagattccgatccttcgttgt |
394 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995190 |
atgaaatgatgggaagtggttatgtatggatagccactgattggctttctacgatactagattccgatccttcgttgt |
30995113 |
T |
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