View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_25 (Length: 343)
Name: NF3116_low_25
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_25 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 7096238 - 7095908
Alignment:
| Q |
13 |
taggcaggtaaatctaggtggtggataatgtgaatcaagaatgttgagggtgagaggttttttaaagatttaaatttgagtggtagaaatccaagtttct |
112 |
Q |
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| T |
7096238 |
taggcaggtaaatctaggtggtggataatgtgaatcaagaatgttgagggtgagaggttttttaaagatttaaatttgagtggtagaaatctaagtttct |
7096139 |
T |
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| Q |
113 |
gtgagttaagatagtggttctatgagtatttatgaagatatagtaatgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagact |
212 |
Q |
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| T |
7096138 |
gtgagttaggatagtggttctatgagtatttatgaagatagagtaatgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagact |
7096039 |
T |
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| Q |
213 |
actggaacttctggagatgttaacgcccagatggctcaggctatgactgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgagacc |
312 |
Q |
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| T |
7096038 |
actggaacttctggagatgttaacgcccagatggctcaggctatgactgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgagacc |
7095939 |
T |
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| Q |
313 |
aattgaaacagcagagagaagatagggaagc |
343 |
Q |
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| T |
7095938 |
aattgaaacagcagagagaagatagggaagc |
7095908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 58 - 343
Target Start/End: Original strand, 8375609 - 8375894
Alignment:
| Q |
58 |
gagggtgagaggttttttaaagatttaaatttgagtggtagaaatccaagtttctgtgagttaagatagtggttctatgagtatttatgaagatatagta |
157 |
Q |
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| T |
8375609 |
gagggtgagaggttttttaaagatttaaatttgagtgatagaaatctaagtttctgtgagttaagatagtggttctatgagtatttatgaagatatagta |
8375708 |
T |
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| Q |
158 |
atgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagactactggaacttctggagatgttaacgcccagatggctcaggctatg |
257 |
Q |
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| T |
8375709 |
atgacttgtttaagcattgcaggaaacaatgcctccaagacgtactccggagactattggaacttctggagatgttaacgcccagatggctcaggctatg |
8375808 |
T |
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| Q |
258 |
actgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgagaccaattgaaacagcagagagaagatagggaagc |
343 |
Q |
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| T |
8375809 |
actgacatggctgctgctgctgctgcacaaacagccgccaaaattcagcgagaccaattgaaacagcagagagaagatagggaagc |
8375894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 339
Target Start/End: Original strand, 15420358 - 15420487
Alignment:
| Q |
210 |
actactggaacttctggagatgttaacgcccagatggctcaggctatgactgacatggctgctgctgttgctgcacaaacagccgccaaaattcagcgag |
309 |
Q |
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||||||||||| |||| |||||||| || |||||||| |||| |||| |||||||||||| || |||||||||||||| | ||||||||||||||| | |
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| T |
15420358 |
actactggaacccctggtgatgttaatgctcagatggccaaggcgatgagtgacatggctgcggcggttgctgcacaaactgtcgccaaaattcagcggg |
15420457 |
T |
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| Q |
310 |
accaattgaaacagcagagagaagataggg |
339 |
Q |
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| T |
15420458 |
atcagttgaaacaacagagagaagataggg |
15420487 |
T |
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