View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_34 (Length: 290)
Name: NF3116_low_34
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 48414919 - 48415185
Alignment:
| Q |
16 |
ttattttctcaatgctggaaacaatggaagattctctccgtttagcaaaatcacgctcacgtgctttcatcacagcttctctttcgtatatttcactttc |
115 |
Q |
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| T |
48414919 |
ttattttctcaatgctggaaacaatggaagattctctccgtttagcaaaatcacgctcacgtgctttcatcacagcttctctttcgtatatttcactttc |
48415018 |
T |
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| Q |
116 |
ttcacgcctccaattttcttccctctgcatcctttctttttccattctatcaatcacctccaacaatttattctgaagaacctcttggtgattaaccaca |
215 |
Q |
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| T |
48415019 |
ttcccgcctccaattttcttccctctgcatcctttctttttccattctatcaatcacctccaacaatttattctgaagaacctcttggtgattaaccaca |
48415118 |
T |
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| Q |
216 |
gttttggtcaatcttttaaagaacactctcatcaaactcatttcttccttcagtctcttcctttgct |
282 |
Q |
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| T |
48415119 |
gttttggtcaatcttttaaagaacactctcatcaaactcatttcttccttcagtctcttcttttgct |
48415185 |
T |
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