View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_38 (Length: 264)
Name: NF3116_low_38
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 5652050 - 5652246
Alignment:
| Q |
54 |
tatcaaatgttattgtagtcttttagatgtactttcggaacataatgttcttattatttaatgcaaaacaggagataaatatacatgaaatgcattccaa |
153 |
Q |
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| T |
5652050 |
tatcaaatgttattgtagtcttttagatgtacttttggaacataatgttcttattattttatgcaaaacaggagataaatatacatgaaatgcattccaa |
5652149 |
T |
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| Q |
154 |
taatataatttgtcatccacaaggaccacaacattccaacttgatatgaattaaatcacagaacaatccgtacgaatgttcccattgtgtgaattct |
250 |
Q |
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| T |
5652150 |
taagataatttgtcatccacaaggaccacaacattccaatttgatatgaattaaatcacagaacaatccgtacgaatgttcccattgtgtgaattct |
5652246 |
T |
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