View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_4 (Length: 567)
Name: NF3116_low_4
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_4 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Original strand, 26609851 - 26610385
Alignment:
| Q |
19 |
acatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattaactataatcaacgagtgtgtgttgaaggtaggtc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
26609851 |
acatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattatctataatcaatgagtgtgtgttgaaggtaggtc |
26609950 |
T |
|
| Q |
119 |
ttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgt |
218 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609951 |
ttggatatgtggggagtgcattcgtgtctttgttggtgtttattttgtgtgttctgtttacatacgacatctttgtagtctctgatttaccgatctctgt |
26610050 |
T |
|
| Q |
219 |
tcatgttgagcatagatttaggttttaataaattttgccgttgnnnnnnntagttgtctaagtgtatggttttaaatcgtggtggcggtcacagcataaa |
318 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| | |||| |
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| T |
26610051 |
tcatgttgagcagagatttaggttataataaattttgccgttgaaaaaaa-agttgtttaagtgtatggttttaaatcgtggtgtcggtcacaacgtaaa |
26610149 |
T |
|
| Q |
319 |
ccttcatattgcgaaaaatatggtcaatgtagttgcaatgttgttttggagacctcaaaatcttcaatagtacannnnnnnnaagggaaatagtacagtt |
418 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26610150 |
ccttcatattgcgaaaaatgtggtcaatgtagttgcaatgttgttttggagacctcaaaatcttcaatagtaca-tttttttaagggaaatagtacagtt |
26610248 |
T |
|
| Q |
419 |
gtagactataatttaaaccaatggttgtaccggttatgtggatttatgtagagacccgagtttgatttgtatataatacatttttgaagtaggttaacaa |
518 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26610249 |
gtagactgtaatttaaaacaatggttgtaccggttatgtggatttatgtagagacccgagtttgatttgtatataatacatttttgaagtaggttaacaa |
26610348 |
T |
|
| Q |
519 |
aaattaaatgtttgtttgtcttcacggtgaatatatt |
555 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
26610349 |
aaattaagtgtttgtttgtcttcacggtgaatatatt |
26610385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 8987700 - 8987582
Alignment:
| Q |
103 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctct |
201 |
Q |
| |
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|||||||||||||||||| | | ||| || ||| | ||||||||||||||||||||||||||| |||||| | || ||| | ||| ||||||||| |
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| T |
8987700 |
gtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattggtgtttattttgggtgttccgcatatatatggtgccttcgtagtctct |
8987601 |
T |
|
| Q |
202 |
gatttaccgatctctgttc |
220 |
Q |
| |
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|||||||| |||||||||| |
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| T |
8987600 |
gatttaccaatctctgttc |
8987582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 21301 - 21181
Alignment:
| Q |
138 |
attcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagcatagattt |
237 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||| | ||| |||||||| |||||||||||||||||||| | | | ||||| | ||| ||| |||| |
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| T |
21301 |
attcgtgtctttattgatgttcattttgggtgttccgcctatatacgacacctttgtagtctctgatttacaggtttttgttcgtcttgtgcagagatcg |
21202 |
T |
|
| Q |
238 |
aggttttaataaattttgccg |
258 |
Q |
| |
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|| ||| |||||||||||||| |
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| T |
21201 |
agttttaaataaattttgccg |
21181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 21029981 - 21030060
Alignment:
| Q |
149 |
tattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgag |
228 |
Q |
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||||||||||||||||| |||||| | ||||||||| || ||||||||||| |||||||||| |||| ||||||||||| |
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| T |
21029981 |
tattggtgtttattttgggtgttccgcctacatacggcacctttgtagtctttgatttaccggtctcgattcatgttgag |
21030060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 5746925 - 5747022
Alignment:
| Q |
103 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtct |
199 |
Q |
| |
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|||||||||||||||||| | || ||| || ||| | ||||||||||||||| |||| ||||| |||||| | ||| ||||||| ||||||||||| |
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| T |
5746925 |
gtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcattttaggtgttccgcctatatacgacgcctttgtagtct |
5747022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 33283733 - 33283620
Alignment:
| Q |
103 |
gtgttgaaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctg |
202 |
Q |
| |
|
|||||||| ||||||||||||| ||| || | |||||||| ||||| ||||||||||||| ||||| ||||| |||| || ||||| || |||||| |
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| T |
33283733 |
gtgttgaaattaggtcttggataggtgatgtaggtattcgtgtttttatcggtgtttattttggatgttccgtctatatacaacgtctttataatctctg |
33283634 |
T |
|
| Q |
203 |
atttaccgatctct |
216 |
Q |
| |
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|||||||||||||| |
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| T |
33283633 |
atttaccgatctct |
33283620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 43344593 - 43344505
Alignment:
| Q |
142 |
gtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagca |
230 |
Q |
| |
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|||||||||||||||||||||||| || ||| | ||| ||||| || ||||||||||||| ||||||| ||||| ||| | ||||||| |
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| T |
43344593 |
gtgtctttattggtgtttattttgagttttccgcctatatacggcacatttgtagtctctggtttaccggtctctattcgtcttgagca |
43344505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 15817072 - 15817012
Alignment:
| Q |
190 |
tttgtagtctctgatttaccgatctctgttcatgttgagcatagatttaggttttaataaa |
250 |
Q |
| |
|
|||||||||||| ||| || | ||||||||||| ||||||| |||| ||| |||||||||| |
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|
| T |
15817072 |
tttgtagtctctaattgactggtctctgttcatcttgagcagagatctagtttttaataaa |
15817012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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