View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_41 (Length: 253)
Name: NF3116_low_41
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 41896568 - 41896792
Alignment:
| Q |
19 |
aacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataatagta |
118 |
Q |
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| T |
41896568 |
aacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataatagta |
41896667 |
T |
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| Q |
119 |
aatatgcattcaaatattttatgaagaatatgataaaaattgctaaatttatttatgagaaccgtattacggagaaagtaacgatatttgtaatcagcgg |
218 |
Q |
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| T |
41896668 |
aatatgcattcaaatactttatgaagaatatgataaaaattgctaaatttatttatgagaaacgtattacggagaaagtaacgatatttgtaatcagcgg |
41896767 |
T |
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| Q |
219 |
tccgagactttggaattgctttctt |
243 |
Q |
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| T |
41896768 |
tccgagactttggaattgctttctt |
41896792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 41891834 - 41891943
Alignment:
| Q |
23 |
cccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactgtaacacaattcataaaataatcaataatagtaaata |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||| |||| |||||||| | ||| ||| || |
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| T |
41891834 |
cccacttcaaatctttctaagcagaatttcataaattcttcagtaaatggtctcttgtaacctttaacacagttcagaaaataataatcaatgataagta |
41891933 |
T |
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| Q |
123 |
tgcattcaaa |
132 |
Q |
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| T |
41891934 |
tgcattcaaa |
41891943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 34453802 - 34453742
Alignment:
| Q |
26 |
acttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
86 |
Q |
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| T |
34453802 |
acttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
34453742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 41829119 - 41829059
Alignment:
| Q |
26 |
acttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41829119 |
acttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41829059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 41885593 - 41885653
Alignment:
| Q |
26 |
acttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
86 |
Q |
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| T |
41885593 |
acttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41885653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 41893545 - 41893622
Alignment:
| Q |
172 |
tatgagaaccgtattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttctcact |
249 |
Q |
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|||||||| ||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| ||||| |
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| T |
41893545 |
tatgagaaatgtattacggagaaagtaacgatattcgtgatcagcagttcgagactttggaattgctttcttatcact |
41893622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 41901773 - 41901838
Alignment:
| Q |
183 |
tattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttctcac |
248 |
Q |
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||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
41901773 |
tattacgtagaaagtaaggatatttgtaatcagcagttcgagactttggaattgctttcttatcac |
41901838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 41901605 - 41901660
Alignment:
| Q |
23 |
cccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
78 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
41901605 |
cccacttcaaatctttccaagcagaatttaataaattcttcgctaaatggcctctt |
41901660 |
T |
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