View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_low_43 (Length: 250)

Name: NF3116_low_43
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_low_43
NF3116_low_43
[»] chr2 (3 HSPs)
chr2 (1-238)||(41009528-41009765)
chr2 (14-70)||(4075533-4075589)
chr2 (6-34)||(10498684-10498712)
[»] chr7 (3 HSPs)
chr7 (6-72)||(18114605-18114671)
chr7 (14-70)||(43265900-43265956)
chr7 (42-70)||(22972881-22972909)
[»] scaffold0684 (1 HSPs)
scaffold0684 (13-72)||(4195-4254)
[»] scaffold0163 (1 HSPs)
scaffold0163 (13-72)||(3864-3923)
[»] chr3 (7 HSPs)
chr3 (6-72)||(4137227-4137293)
chr3 (14-70)||(7856590-7856646)
chr3 (26-72)||(12005423-12005469)
chr3 (14-70)||(25070677-25070733)
chr3 (14-70)||(26903241-26903297)
chr3 (14-70)||(36617743-36617799)
chr3 (6-34)||(49907008-49907036)
[»] chr1 (4 HSPs)
chr1 (6-72)||(45867669-45867735)
chr1 (6-39)||(13694311-13694344)
chr1 (14-70)||(1016971-1017027)
chr1 (14-70)||(8065071-8065127)
[»] chr4 (2 HSPs)
chr4 (14-70)||(1112090-1112146)
chr4 (6-34)||(13216580-13216608)
[»] chr8 (3 HSPs)
chr8 (14-72)||(31235806-31235864)
chr8 (42-70)||(12585748-12585776)
chr8 (14-70)||(45486161-45486217)
[»] chr6 (3 HSPs)
chr6 (6-64)||(14430003-14430061)
chr6 (14-70)||(18817003-18817059)
chr6 (14-70)||(24901772-24901828)
[»] chr5 (2 HSPs)
chr5 (15-59)||(7607231-7607275)
chr5 (6-34)||(18475959-18475987)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 41009765 - 41009528
Alignment:
Q  1 ttcttattgttctaagaacatctctttctatatacattataagacaatcatttaaccattgatcacccatctctttctcatccaacgtgcttctgttctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41009765 ttcttattgttctaagaacatctctttctatatacattataagacgatcatttaaccattgatcacccatctctttctcatccaacgtgcttctgttctg 41009666  T
Q  101 tagttatgttgtgttgtgcgcatttgccgagagaaagaagaatgaaaagcgtttgctgagaagtggagggaaagtgtgttcttgtgtttcaggctgagtt 200  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41009665 cagttatgttgtgttgtgcgcatttgctgagagaaagaagaatgaaaagcgtttgctgagaagtggagggaaagtgtgttcttgtgtttcaggctgagtt 41009566  T
Q  201 tgtggaacaaacaaaaagaaaattaaaatttggatctg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41009565 tgtggaacaaacaaaaagaaaattaaaatttggatctg 41009528  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 4075533 - 4075589
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  4075533 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 4075589  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 10498712 - 10498684
Alignment:
Q  6 attgttctaagaacatctctttctatata 34  Q
    |||||||||||||||||||||||||||||    
T  10498712 attgttctaagaacatctctttctatata 10498684  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 18114671 - 18114605
Alignment:
Q  6 attgttctaagaacatctctttctatatacattataagacaatcatttaaccattgatcacccatct 72  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||    
T  18114671 attgttctaagaacatttctttctatatacattacaagacgatcatttaaccattcatcactcatct 18114605  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 43265956 - 43265900
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||||||| |  ||| ||| | ||||||||||||||||||||||||    
T  43265956 aagaacatctctttctataaaagttacaagccgatcatttaaccattgatcacccat 43265900  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 22972909 - 22972881
Alignment:
Q  42 agacaatcatttaaccattgatcacccat 70  Q
    |||||||||||||||||||||||||||||    
T  22972909 agacaatcatttaaccattgatcacccat 22972881  T

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Target: scaffold0684 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 4195 - 4254
Alignment:
Q  13 taagaacatctctttctatatacattataagacaatcatttaaccattgatcacccatct 72  Q
    ||||||||||||||||||||||  ||| ||||||||||||| | ||||||||||||||||    
T  4195 taagaacatctctttctatatatgttacaagacaatcatttgagcattgatcacccatct 4254  T

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Target: scaffold0163 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 3923 - 3864
Alignment:
Q  13 taagaacatctctttctatatacattataagacaatcatttaaccattgatcacccatct 72  Q
    ||||||||||||||||||||||  ||| ||||||||||||| | ||||||||||||||||    
T  3923 taagaacatctctttctatatatgttacaagacaatcatttgagcattgatcacccatct 3864  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 4137293 - 4137227
Alignment:
Q  6 attgttctaagaacatctctttctatatacattataagacaatcatttaaccattgatcacccatct 72  Q
    ||||||||||||||||||||| |||||||  ||| ||||| |||||||||| ||||||||| |||||    
T  4137293 attgttctaagaacatctcttactatatatgttacaagacgatcatttaactattgatcactcatct 4137227  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 7856590 - 7856646
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    |||||||||||||||||||||  ||| |||||| ||||||| ||| |||||||||||    
T  7856590 aagaacatctctttctatataagttacaagacagtcatttagccactgatcacccat 7856646  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 12005469 - 12005423
Alignment:
Q  26 ttctatatacattataagacaatcatttaaccattgatcacccatct 72  Q
    |||||||||| ||| ||||| |||||||||||||||||||| |||||    
T  12005469 ttctatatacgttacaagacgatcatttaaccattgatcactcatct 12005423  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 25070733 - 25070677
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  25070733 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 25070677  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 26903241 - 26903297
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  26903241 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 26903297  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 36617799 - 36617743
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  36617799 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 36617743  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 49907036 - 49907008
Alignment:
Q  6 attgttctaagaacatctctttctatata 34  Q
    |||||||||||||||||||||||||||||    
T  49907036 attgttctaagaacatctctttctatata 49907008  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 45867669 - 45867735
Alignment:
Q  6 attgttctaagaacatctctttctatatacattataagacaatcatttaaccattgatcacccatct 72  Q
    |||||||||||||||||| ||| ||||||||||| ||||| ||| ||||| |||||| ||| |||||    
T  45867669 attgttctaagaacatctatttttatatacattacaagacgatcgtttaaacattgaacactcatct 45867735  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 13694344 - 13694311
Alignment:
Q  6 attgttctaagaacatctctttctatatacatta 39  Q
    ||||||||||||||||||||||||||||| ||||    
T  13694344 attgttctaagaacatctctttctatatagatta 13694311  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 1017027 - 1016971
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  1017027 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 1016971  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 8065071 - 8065127
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    |||||||||||||| ||||||  |||||||||  ||||||||||| |||||| ||||    
T  8065071 aagaacatctctttttatataagttataagacggtcatttaaccaatgatcatccat 8065127  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1112090 - 1112146
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    |||||||| | ||||||||||  ||| ||||||||||||||||||||||||| ||||    
T  1112090 aagaacatgtatttctatataagttacaagacaatcatttaaccattgatcatccat 1112146  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 13216580 - 13216608
Alignment:
Q  6 attgttctaagaacatctctttctatata 34  Q
    |||||||||||||||||||||||||||||    
T  13216580 attgttctaagaacatctctttctatata 13216608  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 31235864 - 31235806
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccatct 72  Q
    |||||||||||| ||||| ||| ||| ||||| ||||||||| |||||| |||||||||    
T  31235864 aagaacatctctctctatgtacgttacaagacgatcatttaaacattgaccacccatct 31235806  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 12585748 - 12585776
Alignment:
Q  42 agacaatcatttaaccattgatcacccat 70  Q
    |||||||||||||||||||||||||||||    
T  12585748 agacaatcatttaaccattgatcacccat 12585776  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 45486217 - 45486161
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  45486217 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 45486161  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 14430061 - 14430003
Alignment:
Q  6 attgttctaagaacatctctttctatatacattataagacaatcatttaaccattgatc 64  Q
    |||||| ||||||||||||||||||||||| ||| ||||  |||||||||  |||||||    
T  14430061 attgttttaagaacatctctttctatatacgttacaagatgatcatttaattattgatc 14430003  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 18817003 - 18817059
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  18817003 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 18817059  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 24901772 - 24901828
Alignment:
Q  14 aagaacatctctttctatatacattataagacaatcatttaaccattgatcacccat 70  Q
    ||||||||||||||| ||| |  ||| ||| | ||||||||||||||||||||||||    
T  24901772 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccat 24901828  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 7607275 - 7607231
Alignment:
Q  15 agaacatctctttctatatacattataagacaatcatttaaccat 59  Q
    ||||||||||||||||||||  ||| |||||| ||||||||||||    
T  7607275 agaacatctctttctatataagttacaagacactcatttaaccat 7607231  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 18475987 - 18475959
Alignment:
Q  6 attgttctaagaacatctctttctatata 34  Q
    |||||||||||||||||||||||||||||    
T  18475987 attgttctaagaacatctctttctatata 18475959  T

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