View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_48 (Length: 249)
Name: NF3116_low_48
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42821042 - 42820807
Alignment:
| Q |
1 |
ttataagtagataatttaatgagcaaatatccccaatctgacaaaattttaagtggttgatattcattataacaattaacaactgataaatgacagatac |
100 |
Q |
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| T |
42821042 |
ttataagtagataatttaatgagcaaatatccccaaactgacaaaattttaagtggttgatattcattataacaattaacaactgataaatgacagatac |
42820943 |
T |
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| Q |
101 |
caattagtcaactgtacaacagaattagtgctactaaccgaaattattttcaggagaaacttaggcaaaccgtcattcttcatcgtcttctcatttcaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42820942 |
caattagtcaactgtacaacagaattagtgctactaaccgaaattattttcaggagaaacttaggcaaaccgtcattcttcatcgtcttctaatttcaag |
42820843 |
T |
|
| Q |
201 |
tgttcccaaattcagctaacatgtctgtatcttgtt |
236 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
42820842 |
tgttcccaaattcagctaacatgtctgtatcctgtt |
42820807 |
T |
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