View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_49 (Length: 248)
Name: NF3116_low_49
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 32528128 - 32528349
Alignment:
| Q |
18 |
aagaacaccatcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttgtagatttggaaagaaccagaaatcag |
117 |
Q |
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| T |
32528128 |
aagaacaccatcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttgtagatctggaaagaaccagaaatcag |
32528227 |
T |
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| Q |
118 |
aggcaagaaatacaaccacaaactaaagatttcaaactgaacctacctagatggggnnnnnnnnnccaaaaccactgacgtaaccgccagagttctgaaa |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32528228 |
aggcaagaaatacagccacaaactaaagatttcaaactgaacctacctagatgggg-tttttcttccaaaaccactgacgtaaccgccagagttctgaaa |
32528326 |
T |
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| Q |
218 |
taacaatggacaaacattcatct |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
32528327 |
taacaatggacaaacattcatct |
32528349 |
T |
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