View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_5 (Length: 527)
Name: NF3116_low_5
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 511
Target Start/End: Complemental strand, 5903326 - 5902825
Alignment:
| Q |
8 |
ccaagaaaataaactaaggtagattattgagtcaatagtcaatatttataactatattatatattttagaaaatgaacaacatattaagaaaattattgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
5903326 |
ccaagaaaataaactaaggtagattattgagtcaatagtcaatatttataactatattatat--tttagaaaatgaacaaaatattaagaaaattattgc |
5903229 |
T |
|
| Q |
108 |
aaacaacttacttggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccat |
207 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903228 |
aaccaacttacatggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccat |
5903129 |
T |
|
| Q |
208 |
catcaaagaaagtttttgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcctcaaaccctttatcagggacaaatttgtc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903128 |
catcaaagaaagtttttgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcctcaaaccctttatcagggacaaatttgtc |
5903029 |
T |
|
| Q |
308 |
cttttcatcattataagtcccaatgagataataatcatgttttttatcatccaaactaaccttcaatacatgcctaacatcgtcactatttaatgacgtg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903028 |
cttttcatcattataagtcccaatgagataataatcatgttttttatcatccaaactaaccttcaatacatgcctaacatcgtcactatttaatgacgtg |
5902929 |
T |
|
| Q |
408 |
tcaacaccaaatctaccaattttcaaaacaggnnnnnnntcaggacactcccacattccagtgcctttagctgaatgcaaagggtgttttgatttaatcc |
507 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5902928 |
tcaacaccaaatctaccaattttcaaaacaggaaaaaaatcaggacactcccacattccagtgcctttagctgaatgcaaagggtgttttgatttaatcc |
5902829 |
T |
|
| Q |
508 |
aatt |
511 |
Q |
| |
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|||| |
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| T |
5902828 |
aatt |
5902825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 42875113 - 42875257
Alignment:
| Q |
112 |
aacttacttggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatc |
211 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||| || | ||| ||||||||||||||||||||||| |
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| T |
42875113 |
aacttacatggattccagaccatcctttcttgacatcatcaacaacacttgaagattcattagcccaacccaacaagatccttctattcttcccatcatc |
42875212 |
T |
|
| Q |
212 |
aaagaaagtttttgatgcataatattttccataatcatatctcaa |
256 |
Q |
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||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
42875213 |
aaaaaatgtttttgatgcataatatttcccataatcatatctcaa |
42875257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 42875315 - 42875388
Alignment:
| Q |
320 |
ataagtcccaatgagataataatcatgttttttatcatccaaactaaccttcaatacatgcctaacatcgtcac |
393 |
Q |
| |
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| T |
42875315 |
ataagtcccaatcaaatagtgatcatgttttgtgtcatccaaactaaccttaagcacatgtctaacatcatcac |
42875388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 42875448 - 42875497
Alignment:
| Q |
447 |
tcaggacactcccacattccagtgcctttagctgaatgcaaagggtgttt |
496 |
Q |
| |
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|||||||||||||||||||| || |||| ||||||||| ||||| ||||| |
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| T |
42875448 |
tcaggacactcccacattcctgttccttcagctgaatgtaaaggatgttt |
42875497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 1055428 - 1055322
Alignment:
| Q |
146 |
atcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatcaaagaaagtttttgatgcataatattttccataa |
245 |
Q |
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||||| ||||||| |||| | |||||| |||| |||||||||||||||||||| || ||||| | ||||||| ||||||||||||||||||| | ||| |
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| T |
1055428 |
atcattagcaacatttgagtagtcattggcccaaccaagcaaaatccttctattttttccatccttaaagaaatattttgatgcataatattttgcttaa |
1055329 |
T |
|
| Q |
246 |
tcatatc |
252 |
Q |
| |
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|| |||| |
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|
| T |
1055328 |
tcttatc |
1055322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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