View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_51 (Length: 246)
Name: NF3116_low_51
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33859879 - 33860111
Alignment:
| Q |
1 |
catcacacagaacacctagagagaaattcaaaggtcgtcctaacaattaatcctacttaataggtaaaatctgttcctagcaatactgaaattcaaattt |
100 |
Q |
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| T |
33859879 |
catcacacagaactcctagagagaaattcaaaggtcttcccaacaattaatcctacttaataggtaaaatctgttcctagcaatactgaaattcaaattt |
33859978 |
T |
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| Q |
101 |
aaaatttctgttatactaatcagcataactaatactaaacagcagaatcataggtcttcttcctcttctgatattgtttttccacaaatacatccatatc |
200 |
Q |
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| T |
33859979 |
aaaaattctattatactaatcagcataactaatcctaaacagcagaatcaaagg---tcttcctcttctgatgttgtttttccacaaatacatccatatc |
33860075 |
T |
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| Q |
201 |
atcatcctgcacgattcaattcatcaatgctgactc |
236 |
Q |
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| T |
33860076 |
atcatcctgcacgattccattcatcaatgctgactc |
33860111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 32867597 - 32867656
Alignment:
| Q |
57 |
ttaataggtaaaatctgttcctagcaatactgaaattcaaatttaaaatttctgttatac |
116 |
Q |
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| T |
32867597 |
ttaataggtaaaatctgttctcaacaatactgtaatttaagtttaaaaattctgttatac |
32867656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 32867697 - 32867753
Alignment:
| Q |
143 |
cagaatcataggtcttcttcctcttctgatattgtttttccacaaatacatccatatca |
201 |
Q |
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| T |
32867697 |
cagaatcaaaggtcttc--cctcttctgatattgttttcccacaaatgcatccgtatca |
32867753 |
T |
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