View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_low_52 (Length: 243)

Name: NF3116_low_52
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_low_52
NF3116_low_52
[»] chr1 (3 HSPs)
chr1 (1-175)||(30112490-30112664)
chr1 (1-175)||(30153143-30153317)
chr1 (1-175)||(30156488-30156662)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 30112490 - 30112664
Alignment:
Q  1 tgtagaaaacaacaaatgattgtgatacgttcttttttgcttttcaagggatgtgatacattcatttattgtcgtctaatactataagtctataacattc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30112490 tgtagaaaacaacaaatggttgtgatacgttcttttttgcttttcaagggatgtgatacattcatttattgtcgtctaatactataagtctataacattc 30112589  T
Q  101 ccttgataaaaaacttaagtgtattttgtgagacccacttatgcactcatttcaagagatcaccaataagaatgc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30112590 ccttgataaaaaacttaagtgtattttgtgagacccacttatgcactcatttcaagagatcaccattaagaatgc 30112664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 30153143 - 30153317
Alignment:
Q  1 tgtagaaaacaacaaatgattgtgatacgttcttttttgcttttcaagggatgtgatacattcatttattgtcgtctaatactataagtctataacattc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30153143 tgtagaaaacaacaaatggttgtgatacgttcttttttgcttttcaagggatgtgatacattcatttattgtcgtctaatactataagtctataacattc 30153242  T
Q  101 ccttgataaaaaacttaagtgtattttgtgagacccacttatgcactcatttcaagagatcaccaataagaatgc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30153243 ccttgataaaaaacttaagtgtattttgtgagacccacttatgcactcatttcaagagatcaccattaagaatgc 30153317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 30156488 - 30156662
Alignment:
Q  1 tgtagaaaacaacaaatgattgtgatacgttcttttttgcttttcaagggatgtgatacattcatttattgtcgtctaatactataagtctataacattc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30156488 tgtagaaaacaacaaatggttgtgatacgttcttttttgcttttcaagggatgtgatacattcatttattgtcgtctaatactataagtctataacattc 30156587  T
Q  101 ccttgataaaaaacttaagtgtattttgtgagacccacttatgcactcatttcaagagatcaccaataagaatgc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30156588 ccttgataaaaaacttaagtgtattttgtgagacccacttatgcactcatttcaagagatcaccattaagaatgc 30156662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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