View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_57 (Length: 236)
Name: NF3116_low_57
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 32184447 - 32184648
Alignment:
| Q |
17 |
gaatcggtgggatagatgaatatggtaaaggtgaaaatgcaatacctggaactggtatctcagaaatctcagcagaagcatcagatattgattgagcaag |
116 |
Q |
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| T |
32184447 |
gaatcggtgggatagatgaatatggtaaaggtgaaaatgcaatacctggaactggtatctcagaaatctcagcagaagcatcagatattgattgagcaag |
32184546 |
T |
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| Q |
117 |
agtagggaagtgagaaaagaaggagaacatagaagctgaagaagtaaacaaggtatagttaggtagagaaagttgttgagtgattgaaatgagaggtgaa |
216 |
Q |
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| T |
32184547 |
agtagggaagtgagaaaagaaggagaacatggaagctgaagaagtaaacaaggtatagttaggtagagaaagttgttgagtgattgaaatgagaggtgaa |
32184646 |
T |
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| Q |
217 |
ag |
218 |
Q |
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|| |
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| T |
32184647 |
ag |
32184648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 32177276 - 32177323
Alignment:
| Q |
22 |
ggtgggatagatgaatatggtaaaggtgaaaatgcaatacctggaact |
69 |
Q |
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| T |
32177276 |
ggtgggatagatgaatatggtaaaggtgaaaatggaatgcctggaact |
32177323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 32177369 - 32177464
Alignment:
| Q |
106 |
gattgagcaagagtagggaagtgagaaaagaaggagaacatagaagctgaagaagtaaacaaggtatagttaggtagagaaagttgttgagtgatt |
201 |
Q |
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| T |
32177369 |
gattgagcaagagtagggaaatgagagaataaggagaacatagcagaagaagaagtgttcaagatgtaattagggagagaaagtttttgagtgatt |
32177464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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