View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_58 (Length: 236)
Name: NF3116_low_58
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42821448 - 42821671
Alignment:
| Q |
1 |
aattctggtaagcttgacatcatgtttaaaaatgctggtaact---ccgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaaggg |
97 |
Q |
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| T |
42821448 |
aattatggtaagcttgacatcatgtttaacaatgctggtatctgatctgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaaggg |
42821547 |
T |
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| Q |
98 |
tatttgatgttaatgtttatggagctttcttgggtgctaagcatgctgctagggtaatgatcccacaaaagaaaggggttattctttttactgcaagtgt |
197 |
Q |
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| T |
42821548 |
tatttgatgtaaatgtttatggagctttcttgggtgctaagcatgctgctagggtaatgatcccacaaaagaaaggggttattctttttactgcaagtgt |
42821647 |
T |
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| Q |
198 |
tgctacaaaaattgctggtgaaac |
221 |
Q |
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| T |
42821648 |
tgctacaaaaattgctggtgaaac |
42821671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 42825086 - 42825304
Alignment:
| Q |
1 |
aattctggtaagcttgacatcatgtttaaaaatgctggtaactccgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaagggtat |
100 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42825086 |
aattatggtaagcttgacatcatgtttaacaatgctggtatctctgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaagggtat |
42825185 |
T |
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| Q |
101 |
ttgatgttaatgtttatggagctttcttgggtgctaagcatgctgctagggtaatgatcccacaaaagaaaggggttattctttttactgcaagtgttgc |
200 |
Q |
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| T |
42825186 |
ttgatgtaaatgtttatggagctttcttgggtgcgaagcatgctgctagggtaatgataccaaataaaaaaggtgttattctttttactgcaagtgttgc |
42825285 |
T |
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| Q |
201 |
tacaaaaattgctggtgaa |
219 |
Q |
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|||| ||| |||||||||| |
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| T |
42825286 |
tacagaaactgctggtgaa |
42825304 |
T |
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