View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_low_59 (Length: 234)

Name: NF3116_low_59
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_low_59
NF3116_low_59
[»] chr5 (26 HSPs)
chr5 (1-115)||(37429794-37429908)
chr5 (117-234)||(37430130-37430247)
chr5 (1-112)||(37399812-37399923)
chr5 (3-112)||(37391961-37392070)
chr5 (117-232)||(37437074-37437189)
chr5 (1-104)||(37595373-37595476)
chr5 (1-104)||(37640921-37641024)
chr5 (37-107)||(37703753-37703823)
chr5 (1-110)||(37412316-37412425)
chr5 (137-234)||(37704061-37704158)
chr5 (1-114)||(37712673-37712786)
chr5 (117-232)||(37534479-37534594)
chr5 (117-232)||(37595703-37595818)
chr5 (117-232)||(37641251-37641366)
chr5 (117-232)||(37712997-37713112)
chr5 (117-232)||(37825268-37825383)
chr5 (1-114)||(37436756-37436869)
chr5 (1-104)||(37534149-37534252)
chr5 (137-232)||(37381001-37381096)
chr5 (137-232)||(37399493-37399588)
chr5 (137-232)||(37411981-37412076)
chr5 (63-114)||(37381333-37381384)
chr5 (137-232)||(37698186-37698281)
chr5 (1-104)||(37697836-37697939)
chr5 (1-104)||(37824944-37825047)
chr5 (141-228)||(37391631-37391718)
[»] chr4 (4 HSPs)
chr4 (18-110)||(24216748-24216840)
chr4 (141-231)||(24216410-24216500)
chr4 (137-229)||(16841545-16841637)
chr4 (67-110)||(16841878-16841921)
[»] chr3 (2 HSPs)
chr3 (1-114)||(14554087-14554200)
chr3 (137-232)||(14554425-14554520)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 37429794 - 37429908
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429794 aaattccttagcagcgacaaagatctctctctgattaaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 37429893  T
Q  101 tccatgtgaatggac 115  Q
    ||||||||| |||||    
T  37429894 tccatgtgagtggac 37429908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 37430130 - 37430247
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37430130 aagatggtgctattggccgctaattcaccgttcagattgttgcaactaaggtccagaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 37430229  T
Q  217 actcgcagcaatctgtgc 234  Q
    ||||||||||||||||||    
T  37430230 actcgcagcaatctgtgc 37430247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 37399923 - 37399812
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||  ||||| || | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37399923 aaattctttagcattgacaaagagctctctctgagggaagacatgttcacaatattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37399824  T
Q  101 tccatgtgaatg 112  Q
    ||||||| ||||    
T  37399823 tccatgtcaatg 37399812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 37392070 - 37391961
Alignment:
Q  3 attccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttcttc 102  Q
    |||| ||||||  |||||||| |||||||| || ||| | ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37392070 attctttagcatagacaaagagctctctctaatggaatacatatccactctattcaaatgaagctcccttaaattagtagcattatgaatgagtttcttc 37391971  T
Q  103 catgtgaatg 112  Q
    ||||| ||||    
T  37391970 catgtcaatg 37391961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 37437074 - 37437189
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| ||||||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37437074 aagatggtgctattgggatgtaattcacctttcagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37437173  T
Q  217 actcgcagcaatctgt 232  Q
    |||| || ||||||||    
T  37437174 actcacaacaatctgt 37437189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37595373 - 37595476
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| |||||  | || ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37595373 aaattctttagcatggacaaagagctctccgtaatggaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37595472  T
Q  101 tcca 104  Q
    ||||    
T  37595473 tcca 37595476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37640921 - 37641024
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| |||||  | || ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37640921 aaattctttagcattgacaaagagctctccgtaatggaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37641020  T
Q  101 tcca 104  Q
    ||||    
T  37641021 tcca 37641024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 37703753 - 37703823
Alignment:
Q  37 gaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttcttccatgt 107  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37703753 gaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttcttccatgt 37703823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37412425 - 37412316
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||||||||||||  |||||||||| ||||| ||||| ||| |||||| ||||||||| |||||||| ||| ||||| ||||||||| ||    
T  37412425 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacattatgaatgagttcct 37412326  T
Q  101 tccatgtgaa 110  Q
    ||||||||||    
T  37412325 tccatgtgaa 37412316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 37704061 - 37704158
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgtgc 234  Q
    ||||||||| ||||||||||||||||| || |||||||||||||| | |||  ||| | |||||||||||||||||||||||||||| ||||||||||    
T  37704061 taattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatcccactcgcaacaatctgtgc 37704158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37712673 - 37712786
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||| ||||| || | |||| ||| ||||| ||| ||||||||||||||||||||| ||||||||||||    
T  37712673 aaattctttagcattgacaaagagctctctctgatggaagacatgttcacattatccaaataaagttcccttaaattagtagcattatgaatgagtttct 37712772  T
Q  101 tccatgtgaatgga 114  Q
    ||||||| ||||||    
T  37712773 tccatgtcaatgga 37712786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 37534479 - 37534594
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37534479 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37534578  T
Q  217 actcgcagcaatctgt 232  Q
    |||| || ||||||||    
T  37534579 actcacaacaatctgt 37534594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 37595703 - 37595818
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37595703 aagatggtgctattgggatgtaattcacctttaagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37595802  T
Q  217 actcgcagcaatctgt 232  Q
    |||| || ||||||||    
T  37595803 actcacaacaatctgt 37595818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 37641251 - 37641366
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37641251 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37641350  T
Q  217 actcgcagcaatctgt 232  Q
    |||| || ||||||||    
T  37641351 actcacaacaatctgt 37641366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 37712997 - 37713112
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37712997 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37713096  T
Q  217 actcgcagcaatctgt 232  Q
    |||| || ||||||||    
T  37713097 actcacaacaatctgt 37713112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 37825268 - 37825383
Alignment:
Q  117 aagatggtgctattggtcgttaattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatccc 216  Q
    ||||||||||||||||    ||||||||| || |||||||||||||| ||||||| ||||||||| | |||  ||||| |||||||||||||||||||||    
T  37825268 aagatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccc 37825367  T
Q  217 actcgcagcaatctgt 232  Q
    |||| || ||||||||    
T  37825368 actcacaacaatctgt 37825383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37436756 - 37436869
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||| || ||||||||| |||||||  |||||||| || | |||   ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  37436756 aaattcgttaacaacgacaaagagctctctccaattgaagacattttcactccattcagatgaagctcccttaaattagtagcattatgaatgagtttct 37436855  T
Q  101 tccatgtgaatgga 114  Q
    |||||| |||||||    
T  37436856 tccatgcgaatgga 37436869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37534149 - 37534252
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||| ||||| || | |||| ||| ||||| ||| ||||||||||||||||||||| ||||||||||||    
T  37534149 aaattctttagcattgacaaagagctctctctgatggaagacatgttcacattatccaaataaagttcccttaaattagtagcattatgaatgagtttct 37534248  T
Q  101 tcca 104  Q
    ||||    
T  37534249 tcca 37534252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 37381096 - 37381001
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgt 232  Q
    ||||||||| ||||||||| ||||||| ||||||| ||||||||||| |||  |||||  |||||||||||||||||||||| | || ||||||||    
T  37381096 taattcaccattcagattgctgcaactgaggtccagaccaatcacatgatctgacatggagtcgcacgtgacaccatcccacccacaacaatctgt 37381001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 37399588 - 37399493
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgt 232  Q
    ||||||||| || || ||||||||||| ||||||| ||||||||| | |||  ||||| ||||||||||||||||||||||||| || ||||||||    
T  37399588 taattcaccttttagtttgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatcccactcacaacaatctgt 37399493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 37412076 - 37411981
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgt 232  Q
    ||||||||| || ||||||||||| |||||||||||||||||||||| |||  | | | |||||||| ||||||||| ||||||||| ||||||||    
T  37412076 taattcacctttaagattgttgcacctaaggtccaaaccaatcacatgatccaaaacggtgtcgcacatgacaccataccactcgcaacaatctgt 37411981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 37381384 - 37381333
Alignment:
Q  63 aagctcccttaaattagtagcattaagaatgagtttcttccatgtgaatgga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  37381384 aagctcccttaaattagtagcattatgaatgagtttcttccatgtcaatgga 37381333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 37698186 - 37698281
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgt 232  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||| |||||  ||    |||| ||||||||||||||||||| ||| ||||||||    
T  37698186 taattcacctttcaaattgttgcaactgaggtccaaaccaatcacgtaatccgactcagtgtcacacgtgacaccatcccacttgcaacaatctgt 37698281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37697836 - 37697939
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  ||||| || ||||||| ||||||||| || | |||   ||| | |||||| ||||||||||||||||||||| ||||||||||||    
T  37697836 aaattctttagcattgacaatgagctctctccgattgaagacatgttcactccattaagatgaagatcccttaaattagtagcattatgaatgagtttct 37697935  T
Q  101 tcca 104  Q
    ||||    
T  37697936 tcca 37697939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37824944 - 37825047
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  ||||| || ||||||| ||||||||| || | |||   ||| | |||||| ||||||||||||||||||||| ||||||||||||    
T  37824944 aaattctttagcattgacaatgagctctctccgattgaagacatgttcactccattaagatgaagatcccttaaattagtagcattatgaatgagtttct 37825043  T
Q  101 tcca 104  Q
    ||||    
T  37825044 tcca 37825047  T

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Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 37391718 - 37391631
Alignment:
Q  141 tcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaat 228  Q
    ||||| |||| |||||||||||| ||||| |   ||||||| | |||  ||||| |||||||||||||||||||||||| ||| ||||    
T  37391718 tcaccattcaaattgttgcaactgaggtctagttcaatcacgtgatctgacatggtgtcgcacgtgacaccatcccacttgcaacaat 37391631  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 24216840 - 24216748
Alignment:
Q  18 caaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttcttccatgtgaa 110  Q
    |||||| |||||||||||||||||||| |||||   |||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24216840 caaagagctctctctgattgaagatatgtccactccattcaggtaaagctcccttaaattagtagcattatgaatgagtttcttccatgtgaa 24216748  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 24216500 - 24216410
Alignment:
Q  141 tcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctg 231  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||||   || |  |||| ||| |||| |||||||||||||| |||||||    
T  24216500 tcacctttcagattgttgcaactaaggtccagaccaatcacgtaatttgacctagtgtcacacatgaccccatcccactcgcaacaatctg 24216410  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 16841637 - 16841545
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatc 229  Q
    ||||||||| |||| |||||||||||| ||||||||||||| ||| |||||  |     |||| ||||||||||||||||||| ||| |||||    
T  16841637 taattcacctttcaaattgttgcaactgaggtccaaaccaaccacgtaatctgattcagtgtcacacgtgacaccatcccacttgcaacaatc 16841545  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 16841921 - 16841878
Alignment:
Q  67 tcccttaaattagtagcattaagaatgagtttcttccatgtgaa 110  Q
    |||||||| |||||||||||| |||||||||||||||| |||||    
T  16841921 tcccttaatttagtagcattatgaatgagtttcttccaagtgaa 16841878  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14554087 - 14554200
Alignment:
Q  1 aaattccttagcagcgacaaagatctctctctgattgaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 100  Q
    |||||| ||||||  |||||||| ||||||||||| ||||| || | |||   ||||| || ||| ||||||||||||||||||||| |||||||||| |    
T  14554087 aaattctttagcattgacaaagagctctctctgatggaagacatgttcactccattcagataaagatcccttaaattagtagcattatgaatgagtttat 14554186  T
Q  101 tccatgtgaatgga 114  Q
    ||||||| ||||||    
T  14554187 tccatgtaaatgga 14554200  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 14554425 - 14554520
Alignment:
Q  137 taattcaccgttcagattgttgcaactaaggtccaaaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgcagcaatctgt 232  Q
    ||||||||| |||| |||||||||||||||||| |   ||||||| | | |  | ||| |||||||||||||||||||||||||||| ||||||||    
T  14554425 taattcaccattcaaattgttgcaactaaggtctagttcaatcacgtgacctgatatggtgtcgcacgtgacaccatcccactcgcaacaatctgt 14554520  T

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