View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_62 (Length: 225)
Name: NF3116_low_62
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 2458120 - 2457931
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgt |
119 |
Q |
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| T |
2458120 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgt |
2458021 |
T |
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| Q |
120 |
aatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgc |
209 |
Q |
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| T |
2458020 |
aatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctgtgc |
2457931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 3063298 - 3063487
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
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| T |
3063298 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgag |
3063397 |
T |
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| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctg |
206 |
Q |
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| T |
3063398 |
tataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaacttcactgcatctg |
3063487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 2462699 - 2462510
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
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| T |
2462699 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctggg |
2462600 |
T |
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| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctg |
206 |
Q |
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| T |
2462599 |
tataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacttcactgcatctg |
2462510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 2466747 - 2466558
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
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| T |
2466747 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctggg |
2466648 |
T |
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| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctg |
206 |
Q |
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| T |
2466647 |
tataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacttcactgcatctg |
2466558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 2470069 - 2469891
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgt |
119 |
Q |
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|||||||| |||||||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||| || | ||||||||||||||| |||||||||| |
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| T |
2470069 |
cctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcacatccaatccgttgtgtgtttctccaaaccacctgagtgt |
2469970 |
T |
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| Q |
120 |
aatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcac |
198 |
Q |
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| |||||||||| || |||| |||||||| |||||| |||| | ||||| | ||| |||| |||||||||| |||| |
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| T |
2469969 |
agtggccacacatttcaccattagcacatgaattactactataatcatagtagggtttttcatccacccacaacttcac |
2469891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 2474331 - 2474236
Alignment:
| Q |
29 |
tcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaacaacctgagtgtaatgg |
124 |
Q |
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| T |
2474331 |
tcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaaccacctgagtataatgg |
2474236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 2471090 - 2471027
Alignment:
| Q |
23 |
ggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaa |
86 |
Q |
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||||| || ||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaa |
2471027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 18016022 - 18015833
Alignment:
| Q |
20 |
cctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgctttgtgtttctccaaacaacctgag |
116 |
Q |
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|||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | || |||||||||||||||||||| |
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| T |
18016022 |
cctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgag |
18015923 |
T |
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| Q |
117 |
tgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcactgcatctg |
206 |
Q |
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| T |
18015922 |
tataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaacttcactgcatctg |
18015833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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