View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_65 (Length: 221)
Name: NF3116_low_65
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_65 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 53202350 - 53202570
Alignment:
| Q |
1 |
gtattaagctctacggttttctcagtgctcgtaccttcaccggcgtttttgttgtcatgatatcaaccaccgtggtgggtcttatcctaatggcaacgct |
100 |
Q |
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| T |
53202350 |
gtattaagctctacggttttctctgtgctcgtaccttcaccggcgtttttgttgtcatgatatcaaccaccgtggtgggtcttatcctaatggcaacgct |
53202449 |
T |
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| Q |
101 |
gacgtgggatgtctctcgtaaagccacgtatgctttcaaccgccaccatcctccaccgttgatttgtaagggaggcatttgttggcacggcgtctccgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
53202450 |
gacgtgggatgtctctcgtaaagccacgtatgctttcaaccgccaccatcctccaccgttgatttgtaagggaggtatttgttggcacggcgtcgccgtc |
53202549 |
T |
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| Q |
201 |
cgatcaccggcttctcaggtc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
53202550 |
cgatcaccggcttctcaggtc |
53202570 |
T |
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