View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_low_67 (Length: 213)

Name: NF3116_low_67
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_low_67
NF3116_low_67
[»] chr2 (12 HSPs)
chr2 (65-198)||(33859508-33859642)
chr2 (1-64)||(3121610-3121673)
chr2 (1-73)||(33299970-33300042)
chr2 (5-61)||(36272784-36272840)
chr2 (1-64)||(24475820-24475883)
chr2 (5-63)||(13697088-13697146)
chr2 (7-65)||(14945861-14945919)
chr2 (5-66)||(40095261-40095322)
chr2 (5-64)||(32599371-32599430)
chr2 (5-64)||(36709314-36709373)
chr2 (23-69)||(23860305-23860351)
chr2 (5-63)||(42061354-42061412)
[»] chr1 (19 HSPs)
chr1 (1-64)||(46845775-46845838)
chr1 (1-64)||(527018-527081)
chr1 (1-64)||(39858347-39858410)
chr1 (5-65)||(1994952-1995012)
chr1 (1-65)||(6487727-6487791)
chr1 (5-65)||(27325751-27325811)
chr1 (5-65)||(44797589-44797649)
chr1 (5-64)||(2403048-2403107)
chr1 (1-64)||(40294850-40294913)
chr1 (1-64)||(49430583-49430646)
chr1 (5-63)||(13276587-13276645)
chr1 (5-65)||(1673368-1673428)
chr1 (1-61)||(15225110-15225170)
chr1 (5-60)||(29637333-29637388)
chr1 (16-62)||(33502658-33502704)
chr1 (14-64)||(40030838-40030888)
chr1 (1-62)||(7178230-7178291)
chr1 (1-62)||(26040972-26041033)
chr1 (1-61)||(40314095-40314155)
[»] chr8 (11 HSPs)
chr8 (1-64)||(2599531-2599594)
chr8 (1-65)||(28897994-28898058)
chr8 (1-65)||(45413657-45413721)
chr8 (5-64)||(14342312-14342371)
chr8 (5-66)||(1993763-1993824)
chr8 (1-56)||(8368490-8368545)
chr8 (1-64)||(10391424-10391487)
chr8 (5-63)||(43066027-43066085)
chr8 (1-59)||(16465731-16465789)
chr8 (1-59)||(41075716-41075774)
chr8 (7-64)||(4077086-4077143)
[»] chr6 (5 HSPs)
chr6 (1-64)||(23915972-23916035)
chr6 (5-65)||(14314109-14314169)
chr6 (5-64)||(9045833-9045892)
chr6 (14-64)||(34792783-34792833)
chr6 (5-61)||(1244679-1244735)
[»] chr5 (6 HSPs)
chr5 (1-64)||(15285329-15285392)
chr5 (5-64)||(13988247-13988306)
chr5 (5-64)||(36890377-36890436)
chr5 (1-64)||(35905994-35906057)
chr5 (5-66)||(11247190-11247251)
chr5 (1-61)||(1447866-1447926)
[»] chr7 (6 HSPs)
chr7 (1-65)||(31741042-31741106)
chr7 (5-66)||(46576365-46576426)
chr7 (1-62)||(42974497-42974558)
chr7 (5-65)||(38755018-38755078)
chr7 (5-66)||(48460657-48460718)
chr7 (14-66)||(33496497-33496549)
[»] chr4 (17 HSPs)
chr4 (1-63)||(32290215-32290277)
chr4 (1-65)||(5817499-5817563)
chr4 (5-65)||(17044002-17044062)
chr4 (5-64)||(37605814-37605873)
chr4 (1-64)||(42179256-42179319)
chr4 (1-64)||(50498210-50498273)
chr4 (5-64)||(55281208-55281267)
chr4 (5-63)||(25164594-25164652)
chr4 (1-66)||(24059252-24059317)
chr4 (1-61)||(51579323-51579383)
chr4 (1-64)||(32525141-32525204)
chr4 (5-64)||(43749092-43749151)
chr4 (5-64)||(45996017-45996076)
chr4 (15-65)||(20107109-20107159)
chr4 (15-65)||(39631271-39631321)
chr4 (5-61)||(3287087-3287143)
chr4 (1-65)||(22364580-22364644)
[»] chr3 (9 HSPs)
chr3 (1-63)||(23004757-23004819)
chr3 (1-64)||(8330711-8330774)
chr3 (5-64)||(9271110-9271169)
chr3 (5-64)||(50989203-50989262)
chr3 (5-64)||(51092335-51092394)
chr3 (5-61)||(38247801-38247857)
chr3 (1-60)||(33288136-33288195)
chr3 (5-63)||(12224126-12224184)
chr3 (5-66)||(8496704-8496765)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 33859642 - 33859508
Alignment:
Q  65 aacaacatatatccacacattttatgtattttaccccacaaccccaatgcagaaccatggttttttgatg-ttttactcaatgtagttcaatgtcaatta 163  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33859642 aacaacatatatccacacattttatgtattttacgccacaaccccaatgcagaaccatggttttttgatgtttttactcaatgtagttcaatgtcaatta 33859543  T
Q  164 cttttttaagaacccttcgattatcatagcaaagg 198  Q
    |||||||||||||||||| ||||||||||||||||    
T  33859542 cttttttaagaacccttcaattatcatagcaaagg 33859508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3121673 - 3121610
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  3121673 tcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 3121610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33300042 - 33299970
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaacaacata 73  Q
    |||||||||| ||||||||||||| |||| |||||||  ||| ||||||||||||||||||||| | ||||||    
T  33300042 tcacaattgtatatgggtgtataaatggtacatgccacttaaggtggtctatgtatcactactctataacata 33299970  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 36272784 - 36272840
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||| |||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  36272784 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 36272840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24475820 - 24475883
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||||||||||||||| | ||| ||| |||| ||||||||||||||| |||||    
T  24475820 tcacaattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatcattactc 24475883  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 13697088 - 13697146
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||    
T  13697088 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 13697146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 14945861 - 14945919
Alignment:
Q  7 ttgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  14945861 ttgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 14945919  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 40095322 - 40095261
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||| | ||| |||| ||||||| |||| ||||||| |||||||||||||||||||||||    
T  40095322 aattgtatgtggatgtacaagtggtacatgtcatctaaggtggtctatgtatcactactcaa 40095261  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 32599371 - 32599430
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||| ||| ||| |||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  32599371 aattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 32599430  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 36709314 - 36709373
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||||||||||| ||| ||| ||||  |||||||||||||| |||||    
T  36709314 aattgtgtgtgggtgtataagtggtacataccacctaagatggtctatgtatcagtactc 36709373  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 23860305 - 23860351
Alignment:
Q  23 aagtggtccatgccatctaaagtggtctatgtatcactactcaacaa 69  Q
    ||||||| ||||||| |||| ||||||||||||||||||||| ||||    
T  23860305 aagtggtacatgccacctaaggtggtctatgtatcactactctacaa 23860351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 42061354 - 42061412
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    |||||| | |||||||| ||||||| ||||||| | |||||| ||||||||||||||||    
T  42061354 aattgtatgtgggtgtacaagtggtacatgccacccaaagtgctctatgtatcactact 42061412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46845775 - 46845838
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  46845775 tcacaattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 46845838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 527018 - 527081
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  527018 tcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 527081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39858410 - 39858347
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||||||||||||||||||||||||  |||||| |||| |||||||||||||||||||||    
T  39858410 tcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactc 39858347  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 1995012 - 1994952
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  1995012 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 1994952  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6487791 - 6487727
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||||||| ||| |||| ||||||| ||||||| ||||| |||||||||||||||||||||    
T  6487791 tcacaattgtgtgtggatgtacaagtggtacatgccacctaaattggtctatgtatcactactca 6487727  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 27325751 - 27325811
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  27325751 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 27325811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 44797589 - 44797649
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  44797589 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 44797649  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 2403048 - 2403107
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||||||||  ||||||||||||||||||||    
T  2403048 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcactactc 2403107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40294850 - 40294913
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||||||||| |||| | ||||||| | ||||| ||||||||||||||||||||||||||    
T  40294850 tcacaattgtgtataggtggacaagtggtacgtgccacctaaagtggtctatgtatcactactc 40294913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 49430583 - 49430646
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||||||||| | |||||||||||| ||||||| |||| |||||||||||||||| ||||    
T  49430583 tcacaattgtgtattgatgtataagtggtacatgccacctaaggtggtctatgtatcaccactc 49430646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 13276587 - 13276645
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    ||||||||||| ||||||||||||| ||| ||| |||| ||||||||||||||||||||    
T  13276587 aattgtgtatgagtgtataagtggtacataccacctaaggtggtctatgtatcactact 13276645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 1673428 - 1673368
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||| |||||||| ||||||| ||||||| ||||  |||||||||||||||||||||    
T  1673428 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactca 1673368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15225110 - 15225170
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||||  | ||||||||||||| || ||||||| |||| ||||||||||||||||||    
T  15225110 tcacaattgcatgtgggtgtataagttgtacatgccacctaaggtggtctatgtatcacta 15225170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 29637333 - 29637388
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcact 60  Q
    |||||||| |||||||| ||||||| ||||||| ||||  ||||||||||||||||    
T  29637333 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcact 29637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 33502658 - 33502704
Alignment:
Q  16 ggtgtataagtggtccatgccatctaaagtggtctatgtatcactac 62  Q
    |||||| ||||||| |||| ||||||| |||||||||||||||||||    
T  33502658 ggtgtacaagtggtacatgtcatctaatgtggtctatgtatcactac 33502704  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 40030888 - 40030838
Alignment:
Q  14 tgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| ||||||| ||||| | |||| |||||||||||||||||||||    
T  40030888 tgggtgtacaagtggtacatgctacctaaggtggtctatgtatcactactc 40030838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7178230 - 7178291
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactac 62  Q
    |||||||||| | |||||||| || |||| |||| || |||| |||||||||||||||||||    
T  7178230 tcacaattgtatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatcactac 7178291  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26041033 - 26040972
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactac 62  Q
    |||||||||| | |||||||| ||||||| ||||||| |||| ||||| | |||||||||||    
T  26041033 tcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatcactac 26040972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40314155 - 40314095
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||||||||||| ||||||| |||| ||| | | |||| ||||| ||||||||||||    
T  40314155 tcacaattgtgtatggatgtataaatggtacatactacctaaggtggtttatgtatcacta 40314095  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2599594 - 2599531
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  2599594 tcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 2599531  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28898058 - 28897994
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||||||||||||||||||||||||  |||||| |||| ||||||||||||||||||||||    
T  28898058 tcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactca 28897994  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45413657 - 45413721
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  45413657 tcacaattgtgtatggatgtataagtggtacatgccacctaaggtggtctatgtatcactactca 45413721  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 14342312 - 14342371
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  14342312 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 14342371  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 1993763 - 1993824
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||||| |||||||| ||||| | ||||||| |||| |||||||||||||||||||||||    
T  1993763 aattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactcaa 1993824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8368490 - 8368545
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtat 56  Q
    |||||||||||| |||||||| ||||||| ||||||| |||| |||||||||||||    
T  8368490 tcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10391424 - 10391487
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||||||||||||||||  ||||||| ||||  || ||||||||||| |||||    
T  10391424 tcacaattgtgtatgggtgtataagtggcacatgccacctaagatgatctatgtatcattactc 10391487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 43066027 - 43066085
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    |||||||| ||| |||| ||||||| ||||||| |||| ||||||||||||||||||||    
T  43066027 aattgtgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactact 43066085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16465731 - 16465789
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcac 59  Q
    |||||||||| | ||||| || ||||||| |||||| ||||| ||||||||||||||||    
T  16465731 tcacaattgtatgtgggtatacaagtggtacatgccgtctaaggtggtctatgtatcac 16465789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41075716 - 41075774
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcac 59  Q
    |||||||||| | |||||||| ||||||| |||| || |||| ||||||||||||||||    
T  41075716 tcacaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 41075774  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 4077086 - 4077143
Alignment:
Q  7 ttgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||| ||||| || ||||||| ||||||| |||| ||||||||| |||||||||||    
T  4077086 ttgtgtgtgggtatacaagtggtacatgccacctaaggtggtctatatatcactactc 4077143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23916035 - 23915972
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  23916035 tcacaattgtgtatgggtgtataagtggtacatgccatctaaggtgatctatgtatcactactc 23915972  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 14314109 - 14314169
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  14314109 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 14314169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 9045892 - 9045833
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||| | ||||||| |||| |||||||||||||||||||||    
T  9045892 aattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactc 9045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 34792783 - 34792833
Alignment:
Q  14 tgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  34792783 tgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 34792833  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 1244679 - 1244735
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||| ||| |||| ||||||| |||||||  ||| ||||||||||||||||||    
T  1244679 aattgtgtgtggatgtacaagtggtacatgccacttaaggtggtctatgtatcacta 1244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15285392 - 15285329
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  15285392 tcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 15285329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 13988306 - 13988247
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  13988306 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 13988247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 36890436 - 36890377
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  36890436 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 36890377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35906057 - 35905994
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||||| |||||||||||||||| | ||| ||| |||| ||||||||||||||| |||||    
T  35906057 tcacaattgtatatgggtgtataagtgatacataccacctaaggtggtctatgtatcattactc 35905994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 11247251 - 11247190
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||||| ||| |||| |||| ||  ||||||||||| || ||||||||||||||||||||    
T  11247251 aattgtgtgtggatgtacaagtagtatatgccatctaaggtagtctatgtatcactactcaa 11247190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1447866 - 1447926
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||||||  ||| |||||||||||| ||||||| ||||||| |||||| ||| ||||    
T  1447866 tcacaattgtgcgtggatgtataagtggtacatgccacctaaagttgtctatatataacta 1447926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31741106 - 31741042
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||    
T  31741106 tcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcattactca 31741042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 46576365 - 46576426
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||||    
T  46576365 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcaa 46576426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42974497 - 42974558
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactac 62  Q
    |||||||||| | |||||||||||||||| ||||||| |||| ||||| |||||||||||||    
T  42974497 tcacaattgtatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatcactac 42974558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 38755018 - 38755078
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||| |||||||||||  ||||||| ||||||| |||| ||||||||||||||| ||||||    
T  38755018 aattatgtatgggtgttcaagtggtacatgccacctaaggtggtctatgtatcattactca 38755078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 48460718 - 48460657
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||| | ||| |||| || |||| ||||||| |||| |||||||||||||||||||||||    
T  48460718 aattgtatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatcactactcaa 48460657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 33496549 - 33496497
Alignment:
Q  14 tgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||||| ||||||| |||| || |||| |||||||||||||| ||||||||    
T  33496549 tgggtgtacaagtggtacatgtcacctaaggtggtctatgtatccctactcaa 33496497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32290277 - 32290215
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    ||||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||||    
T  32290277 tcacaattgtgtatgggtgtataagtggtacatgccacctaagatggtctatgtatcactact 32290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5817499 - 5817563
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||||||| |||||||| ||||||| ||||||| ||||  |||||||||||||||||||||    
T  5817499 tcacaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactca 5817563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 17044062 - 17044002
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  17044062 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 17044002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 37605814 - 37605873
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  37605814 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 37605873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42179256 - 42179319
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||| ||||||||||||||||| ||| ||| |||| ||||||||||||||| |||||    
T  42179256 tcacaattgtgcatgggtgtataagtggtacataccacctaaggtggtctatgtatcattactc 42179319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50498273 - 50498210
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    ||||||||||||||||||||||||||||| ||| | | |||| ||| |||||||||||||||||    
T  50498273 tcacaattgtgtatgggtgtataagtggtacatactacctaaggtgatctatgtatcactactc 50498210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 55281267 - 55281208
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  55281267 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 55281208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 25164594 - 25164652
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||    
T  25164594 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 25164652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24059252 - 24059317
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||||||| | |||||||| || || | |||||||||||| |||||||||||||||||||||||    
T  24059252 tcacaattgtatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatcactactcaa 24059317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 51579383 - 51579323
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||||| | |||||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  51579383 tcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 51579323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32525141 - 32525204
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||||||| ||| ||||||||||||  |||||| ||||  ||||||||||||||||||||    
T  32525141 tcacaattgtgtgtggatgtataagtggtatatgccacctaagatggtctatgtatcactactc 32525204  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 43749151 - 43749092
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||| ||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  43749151 aattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 43749092  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 45996017 - 45996076
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||| ||||  ||||||||||||||||||||    
T  45996017 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactc 45996076  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 20107159 - 20107109
Alignment:
Q  15 gggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    ||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  20107159 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 20107109  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 39631271 - 39631321
Alignment:
Q  15 gggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    ||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  39631271 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 39631321  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 3287143 - 3287087
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||| |||||||| ||||||| ||| |||||||| ||||| ||||||||||||    
T  3287143 aattgtgtgtgggtgtacaagtggtacataccatctaaggtggtttatgtatcacta 3287087  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22364580 - 22364644
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactca 65  Q
    |||||||||| ||||||||||||||||||  |||||| ||||  || | ||||||||||||||||    
T  22364580 tcacaattgtatatgggtgtataagtggtatatgccacctaagttgatttatgtatcactactca 22364644  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23004819 - 23004757
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    |||||||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||    
T  23004819 tcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 23004757  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8330711 - 8330774
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||||||| ||  |||| ||||||| |||||||||||| |||||||||||||||||||||    
T  8330711 tcacaattgtgtgtgaatgtacaagtggtacatgccatctaaggtggtctatgtatcactactc 8330774  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 9271169 - 9271110
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||| ||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  9271169 aattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatcactactc 9271110  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 50989262 - 50989203
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  50989262 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 50989203  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 51092394 - 51092335
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactc 64  Q
    |||||||| |||||||| ||||||| ||||||| |||| |||||||||||||||||||||    
T  51092394 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 51092335  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 38247857 - 38247801
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcacta 61  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  38247857 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 38247801  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33288195 - 33288136
Alignment:
Q  1 tcacaattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcact 60  Q
    |||||||||||| |||||||| ||||||| ||| ||| |||| |||||||||||||||||    
T  33288195 tcacaattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatcact 33288136  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 12224126 - 12224184
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactact 63  Q
    |||||||| |||||||| || |||| ||||||| |||| ||||| ||||||||||||||    
T  12224126 aattgtgtgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatcactact 12224184  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 8496765 - 8496704
Alignment:
Q  5 aattgtgtatgggtgtataagtggtccatgccatctaaagtggtctatgtatcactactcaa 66  Q
    |||||| | |||||| | ||||||| ||||||| |||| ||||||||||||||| |||||||    
T  8496765 aattgtatgtgggtggacaagtggtacatgccacctaaggtggtctatgtatcaatactcaa 8496704  T

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