View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3116_low_7 (Length: 522)
Name: NF3116_low_7
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3116_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 237 - 504
Target Start/End: Original strand, 39187829 - 39188096
Alignment:
| Q |
237 |
gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat |
336 |
Q |
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| T |
39187829 |
gtaaacaagagaattgattttctataagatgagatacagcagccatacctcacaaatttgatttcttcgttcatcattctcatttaatcccctattgcat |
39187928 |
T |
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| Q |
337 |
ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcg |
436 |
Q |
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| T |
39187929 |
ccatcaattcccagatcaatataaaccttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcg |
39188028 |
T |
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| Q |
437 |
ttatggtttcagtttaagatacatgatacaacttgccacacaaacaaggtaatgttgtatattatcaa |
504 |
Q |
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| T |
39188029 |
ttatggtttcagtttaagatacatgatacaacttgccacacaaacaaggtaatgttgtatattatcaa |
39188096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 39187606 - 39187803
Alignment:
| Q |
11 |
cagagagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaacgtattgcatagaagcgagaatgtacta |
110 |
Q |
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| T |
39187606 |
cagagagacaaacaaaataaaccatgctctgacttcaacttgacatcatatgcacggtccagaacttgacaatgtattgcatagaagcgagaatgtacta |
39187705 |
T |
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| Q |
111 |
catcatatgcatcgccttaatatccttacgcctgtgtataaattaaaagtaaattcattttacaacaagaagcaactgcttgttcatgtaaaactcgg |
208 |
Q |
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| T |
39187706 |
catcatatgcatcgccttaatatccatacgcctgtgtatagattaaaagtaaattcattttacaacaagaagcaactccttgttcatgtaaaactcgg |
39187803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 455
Target Start/End: Original strand, 3505269 - 3505361
Alignment:
| Q |
363 |
cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga |
455 |
Q |
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| T |
3505269 |
cttcaagtccctgacaactttcttctcatgatcactaaaggaagtatcatcctctatttactttaaagcctgcattatggtttcagttcaaga |
3505361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 2889044 - 2889092
Alignment:
| Q |
238 |
taaacaagagaattgattttctataagatgagatacagcagccatacct |
286 |
Q |
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| T |
2889044 |
taaacaagagatgtgattttctataagatgggagacagcagccatacct |
2889092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 3145818 - 3145770
Alignment:
| Q |
238 |
taaacaagagaattgattttctataagatgagatacagcagccatacct |
286 |
Q |
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| T |
3145818 |
taaacaagagatgtgattttctataagatgggagacagcagccatacct |
3145770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 455
Target Start/End: Original strand, 43313384 - 43313475
Alignment:
| Q |
363 |
cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga |
455 |
Q |
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| T |
43313384 |
cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga |
43313475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 455
Target Start/End: Complemental strand, 34743946 - 34743855
Alignment:
| Q |
363 |
cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga |
455 |
Q |
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| T |
34743946 |
cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga |
34743855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 455
Target Start/End: Complemental strand, 21531757 - 21531666
Alignment:
| Q |
363 |
cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga |
455 |
Q |
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| T |
21531757 |
cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga |
21531666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 455
Target Start/End: Complemental strand, 35167698 - 35167607
Alignment:
| Q |
363 |
cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga |
455 |
Q |
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| T |
35167698 |
cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga |
35167607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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