View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3116_low_9 (Length: 506)

Name: NF3116_low_9
Description: NF3116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3116_low_9
NF3116_low_9
[»] chr2 (4 HSPs)
chr2 (322-461)||(28781176-28781315)
chr2 (342-391)||(16601682-16601731)
chr2 (346-399)||(37047832-37047885)
chr2 (339-391)||(16605177-16605229)
[»] chr3 (4 HSPs)
chr3 (339-391)||(1605424-1605476)
chr3 (239-297)||(4838596-4838654)
chr3 (239-295)||(4836849-4836905)
chr3 (343-391)||(29233208-29233256)
[»] chr5 (2 HSPs)
chr5 (339-391)||(34980525-34980577)
chr5 (340-391)||(34980414-34980465)
[»] chr8 (1 HSPs)
chr8 (339-402)||(33831874-33831937)
[»] chr6 (1 HSPs)
chr6 (339-389)||(3439045-3439095)
[»] chr1 (1 HSPs)
chr1 (337-387)||(39252692-39252741)
[»] chr7 (3 HSPs)
chr7 (340-391)||(18777458-18777508)
chr7 (337-391)||(18777373-18777427)
chr7 (343-391)||(4042821-4042869)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 322 - 461
Target Start/End: Original strand, 28781176 - 28781315
Alignment:
Q  322 caagacttgaagagcaacaagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatactcttgtggattgtaagacttgatgagg 421  Q
    ||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  28781176 caagatttggagatcaacgagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatatccttgtggactgtaagacttgatgagg 28781275  T
Q  422 aaaaatcaaacacgtgaagcagccgcattgcttctcttgc 461  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  28781276 aaaaatcaaacaagtgaagcagccgcattgcttcttttgc 28781315  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16601731 - 16601682
Alignment:
Q  342 gaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    |||| ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  16601731 gaaaataaacaagtgaagcaactaccttacttgtcttgcacttcaagaaa 16601682  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 37047832 - 37047885
Alignment:
Q  346 gtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatactcttg 399  Q
    |||||||||||||| |||||| ||  ||||||||| |||||||||||| |||||    
T  37047832 gtaaacaagtgaagcaaccactttacttgtcttgcccttcaagaaataatcttg 37047885  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 16605229 - 16605177
Alignment:
Q  339 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    ||||||| |||| ||||||||||||| ||||| ||| ||||||||| ||||||    
T  16605229 caagaaattaaaaaagtgaaggaacctccttgtttgccttgcactttaagaaa 16605177  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 1605424 - 1605476
Alignment:
Q  339 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  1605424 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgcacttcaagaaa 1605476  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 4838654 - 4838596
Alignment:
Q  239 attaactagagcaagcaaccatagcaagattttggtagctaatatgatattttcttgta 297  Q
    ||||||||||||||   ||| |||| |||||||||||||||||||||||||||||||||    
T  4838654 attaactagagcaatagaccgtagctagattttggtagctaatatgatattttcttgta 4838596  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 4836905 - 4836849
Alignment:
Q  239 attaactagagcaagcaaccatagcaagattttggtagctaatatgatattttcttg 295  Q
    ||||||||||||||   ||| |||| |||||||||||||||||||||||||||||||    
T  4836905 attaactagagcaatagaccgtagctagattttggtagctaatatgatattttcttg 4836849  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 29233208 - 29233256
Alignment:
Q  343 aaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  29233208 aaagtaaataagtgatggaaccaccttggttgtcttgcacttcaagaaa 29233256  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 34980577 - 34980525
Alignment:
Q  339 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||||    
T  34980577 caagaaagtaaacaagtgaaggaatcaccttgcttgtcttggacttcaagaaa 34980525  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 34980414 - 34980465
Alignment:
Q  340 aagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  34980414 aagaaagtaaacaactgaaggaatcaccttgcttgccttgcacttcaagaaa 34980465  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 402
Target Start/End: Complemental strand, 33831937 - 33831874
Alignment:
Q  339 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatactcttgtgg 402  Q
    ||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||  |||||||    
T  33831937 caagaaagtaaacaagtgaagcaacaaccttgcttgtgttgcacttcaagaaataaccttgtgg 33831874  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 3439095 - 3439045
Alignment:
Q  339 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaaga 389  Q
    ||||||| ||||||||||||| |||||||||| || |||||||||||||||    
T  3439095 caagaaaataaacaagtgaagcaaccaccttgcttatcttgcacttcaaga 3439045  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 39252692 - 39252741
Alignment:
Q  337 aacaagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaa 387  Q
    ||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  39252692 aacaagaaagtaaacaagtgaaggaaccacc-tgcttgtcttgaacttcaa 39252741  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 18777458 - 18777508
Alignment:
Q  340 aagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    |||||||||||||||||||||||||||| |  |||||| |||||||||||||    
T  18777458 aagaaagtaaacaagtgaaggaaccaccat-cttgtctcgcacttcaagaaa 18777508  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 18777373 - 18777427
Alignment:
Q  337 aacaagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    |||||||||||||| || |||||||||||  ||| |||||||| |||||||||||    
T  18777373 aacaagaaagtaaagaattgaaggaaccatattgcttgtcttgaacttcaagaaa 18777427  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 4042869 - 4042821
Alignment:
Q  343 aaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 391  Q
    ||||||||||||||||||||| | |||| || |||| ||||||||||||    
T  4042869 aaagtaaacaagtgaaggaactatcttgtttatcttacacttcaagaaa 4042821  T

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