View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117R-Insertion-1 (Length: 1002)
Name: NF3117R-Insertion-1
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117R-Insertion-1 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 715; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 8 - 895
Target Start/End: Complemental strand, 43879537 - 43878660
Alignment:
| Q |
8 |
aataagatttgaaaccatagattcaaataaagctttcaagatggaaaaaattcttatagatgaatgacattataaattcaattcaattcatgcataaagt |
107 |
Q |
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| T |
43879537 |
aataagatttgaaactatagattcaaataaagctttcaagatggaaaaaattcttatagatgaatgacattataaattcaattca-----tgcataaagt |
43879443 |
T |
|
| Q |
108 |
tt-aatataggtgaaattcaaaccaaacaaactcaaactcttcaacatacatactagttgaagtaaaatatatagaagtcacacnnnnnnntggtgaaag |
206 |
Q |
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| T |
43879442 |
tttaatataggtgaaattcaaaccaaacaaactcaaactcttcaacatacatactagttgaagtaaaata----gaagtcacacaaaaaaatggtgaaag |
43879347 |
T |
|
| Q |
207 |
taaaacagattccattcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaatcttccctttgactttgatcgtttgat |
306 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43879346 |
taaaacagatttcattcatatacaccacaagaattaagatttatattat---ctacaacctgattgatccaaatcttccctttgactttgatcgtttgat |
43879250 |
T |
|
| Q |
307 |
gctgacagaggattgtgaaacagacaattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatag |
406 |
Q |
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| T |
43879249 |
gctgacagaggattgtgaaacagacaattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatag |
43879150 |
T |
|
| Q |
407 |
tgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacacatgaaccat |
506 |
Q |
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| T |
43879149 |
tgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacacatgaatcat |
43879050 |
T |
|
| Q |
507 |
tcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttcacaaaactcacatgnnnnnnnncaatacttgcagcatcttc |
606 |
Q |
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| T |
43879049 |
tcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttcacaaaactcacatgttttttttcaatacttgcagcatcttc |
43878950 |
T |
|
| Q |
607 |
cattgtttgttctcttgacacattcatgctaatttcaccattcctgtttattctattgagatcagactgaagaatatcataaaactcgttgtagaattga |
706 |
Q |
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| T |
43878949 |
cattgttttttctcttgacacattcatgctaatttcaccattcctgtttattctattgagatcagactgaagaatatcataaaactcgttgtagaattga |
43878850 |
T |
|
| Q |
707 |
tcacttgtgtatgttcttgcactattgctacttctacctaagaatggattgaaggaaagagatctaggtagtttttgataccttccaaagatgaaacatt |
806 |
Q |
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| T |
43878849 |
tcacttgtgtatgttcttgcactattgctacttctacctaagaatggattgaaggaaagagatctaggtagtttttgataccctccaaagatgaaacatt |
43878750 |
T |
|
| Q |
807 |
tgaagtttttgagtgnnnnnnnaagt-aaaatctggtcttgcaatgggtttttyctwaragcatttgtggttctggtctgatgtgatgat |
895 |
Q |
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| T |
43878749 |
tgaagtttttgagtgtttttttaagtaaaaatctggtcttgcaaatggtttttcttagaagcatttgtggttctggtctgatgtgatgat |
43878660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 351 - 478
Target Start/End: Original strand, 7574 - 7701
Alignment:
| Q |
351 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga |
450 |
Q |
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| T |
7574 |
tgaaaaacctgttcacaatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctga |
7673 |
T |
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| Q |
451 |
atcattcatctccaattccttcatcttc |
478 |
Q |
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| T |
7674 |
atccatcatatctaattccttcatcttc |
7701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 351 - 478
Target Start/End: Original strand, 13158 - 13285
Alignment:
| Q |
351 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga |
450 |
Q |
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|||||||| |||| |||||||| | ||||| ||||| || || |||||||| |||||||||||||||||||| ||||| || ||||||| ||||||||| |
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| T |
13158 |
tgaaaaacctgtccacaatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctga |
13257 |
T |
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| Q |
451 |
atcattcatctccaattccttcatcttc |
478 |
Q |
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|| |||| |||| || |||||||||| |
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| T |
13258 |
ttccatcatatccattttcttcatcttc |
13285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 1894073 - 1894015
Alignment:
| Q |
221 |
ttcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaat |
280 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||| |
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| T |
1894073 |
ttcatatacaccacaagaattaagatttatgcta-tatctacaacctggttgatctaaat |
1894015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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