View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117R-Insertion-10 (Length: 531)

Name: NF3117R-Insertion-10
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117R-Insertion-10
NF3117R-Insertion-10
[»] chr1 (1 HSPs)
chr1 (9-526)||(43842510-43843035)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 9 - 526
Target Start/End: Complemental strand, 43843035 - 43842510
Alignment:
Q  9 ttcttcttgtgagcttttcttattgctacttgaagaataataatgatcttttagggctacattagaatcagatgcacatgcacatgcatgaggtttgagt 108  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43843035 ttcttcttgtgagcttttcttattgctgcttgaagaataataacgatcttttagggctacattagaatcagatgcacatgcacatgcatgaggtttgagt 43842936  T
Q  109 agtgatgttgatgaatcttcttcttctttggtttgggtggactcaataccaaaacacctcaaaaaagtcttgaaaatttcttcaagacaatagcatggat 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43842935 agtgatgttgatgaatcttcttcttctttggtttgcgtggactcaataccaaaacacctcaaaaaagtcttgaaaatttcttcaagacaatagcatggat 43842836  T
Q  209 ggtaaacatagaaagccattgttttctcttctttcttagttgataatctctccgtagtttcttccatgtgtttcacaattaatctcttgtgcttgatttt 308  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43842835 ggtaaacatagaaagtcattgttttctcttctttcttagttgataatctctccgtagtttcttccatgtgtttcacaattaatctcttgtgcttgatttt 43842736  T
Q  309 gctaaattttagtgattgtttctgttcctttaccacacacagtactagcttatatataaatcaggttttccaaatttctttgtttaggatt--------t 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  43842735 gctaaattttagtgattgtttctgttcctttaccacacacagtactagcttatatataaatcaggttttccaaatttctttgtttaggattttaaatttt 43842636  T
Q  401 taattgagtcnnnnnnnnnnnngaattttgattttgattgatattcgcttctttaattgagattttatcattaatagaaaaatgtgcata---ttagtat 497  Q
    ||||||||||            ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  43842635 taattgagtcaaaaagaaaaaagaattttgattttgattgataatggcttctttaattgagattttatcattaatagaaaaatgtgcataaatatagtat 43842536  T
Q  498 atgataatgatattttaggatcttgttaa 526  Q
    ||||||   |||||||||| |||||||||    
T  43842535 atgata---atattttagggtcttgttaa 43842510  T

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