View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117R-Insertion-12 (Length: 391)

Name: NF3117R-Insertion-12
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117R-Insertion-12
NF3117R-Insertion-12
[»] chr3 (4 HSPs)
chr3 (78-391)||(33385823-33386136)
chr3 (9-82)||(33386943-33387016)
chr3 (106-135)||(33386952-33386981)
chr3 (45-73)||(33386079-33386107)
[»] chr1 (1 HSPs)
chr1 (351-391)||(25428240-25428280)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 78 - 391
Target Start/End: Complemental strand, 33386136 - 33385823
Alignment:
Q  78 cctctgtatttatcaattgttccatatggttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca 177  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386136 cctctgtatttatcaattgttccatatgtttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca 33386037  T
Q  178 ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcatcaaaagaagacaaaagttcttggaggtttgctggatcc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33386036 ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcatcaaaagaagacaaaacttcttggaggtttgctggatcc 33385937  T
Q  278 tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgattacgatcttcttgtacacctttaggcatgtttcttccatcaattattt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33385936 tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgattatgatcttcttgtacacctttaggcatgtttcttccatcaattattt 33385837  T
Q  378 tggtgttttttgaa 391  Q
    ||||||||||||||    
T  33385836 tggtgttttttgaa 33385823  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 33387016 - 33386943
Alignment:
Q  9 gtacattggcccggttaaaagttttccaatgtcacgttttagtttcttttcaaaatttgtttatatatgcctct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387016 gtacattggcccggttaaaagttttccaatgtcacgttttagtttcttttcaaaatttgtttatatatgcctct 33386943  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 33386981 - 33386952
Alignment:
Q  106 gttttagtttcttttcaaaatttgtttata 135  Q
    ||||||||||||||||||||||||||||||    
T  33386981 gttttagtttcttttcaaaatttgtttata 33386952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 33386107 - 33386079
Alignment:
Q  45 ttttagtttcttttcaaaatttgtttata 73  Q
    |||||||||||||||||||||||||||||    
T  33386107 ttttagtttcttttcaaaatttgtttata 33386079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 25428240 - 25428280
Alignment:
Q  351 taggcatgtttcttccatcaattattttggtgttttttgaa 391  Q
    |||||||||| || |||||||||||||||||||||| ||||    
T  25428240 taggcatgttcctcccatcaattattttggtgttttctgaa 25428280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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