View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117R-Insertion-14 (Length: 138)

Name: NF3117R-Insertion-14
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117R-Insertion-14
NF3117R-Insertion-14
[»] chr5 (11 HSPs)
chr5 (9-138)||(39451797-39451926)
chr5 (9-138)||(39455424-39455554)
chr5 (10-138)||(39463804-39463932)
chr5 (14-134)||(39476314-39476434)
chr5 (14-134)||(39484065-39484185)
chr5 (10-138)||(39457542-39457670)
chr5 (11-138)||(39461049-39461179)
chr5 (10-138)||(39470007-39470135)
chr5 (10-138)||(39487263-39487391)
chr5 (10-134)||(39472828-39472952)
chr5 (10-138)||(43311777-43311905)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 2e-65; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 39451797 - 39451926
Alignment:
Q  9 gtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccat 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451797 gtttcgatgaggaccaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccat 39451896  T
Q  109 ggctgcaccttctgattacactctttctga 138  Q
    ||||||||||||||||||||||||||||||    
T  39451897 ggctgcaccttctgattacactctttctga 39451926  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 39455424 - 39455554
Alignment:
Q  9 gtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcacc-aaagggcgcca 107  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||||||  | |||||||| ||||||||||||||||||| | ||| || ||||||||    
T  39455424 gttttgatgaggatcaggttaaggagatcgcatgtgctattgagaatagtaagtcccacttcatatggtctctccgtaaacctgtaccgaaggggcgcca 39455523  T
Q  108 tggctgcaccttctgattacactctttctga 138  Q
     ||||||||||||||||||||||||||||||    
T  39455524 gggctgcaccttctgattacactctttctga 39455554  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 39463932 - 39463804
Alignment:
Q  10 tttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 109  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| | ||| || |||||||| ||||||||  |||||||||||||||||    
T  39463932 tttcgatgaagatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatg 39463833  T
Q  110 gctgcaccttctgattacactctttctga 138  Q
      ||| || ||||||||| ||||||||||    
T  39463832 attgcgccatctgattaccctctttctga 39463804  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 39476314 - 39476434
Alignment:
Q  14 gatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatggctg 113  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||| ||||||||  || |||||||| | |||||||    
T  39476314 gatgaagatcaggttaaggagatcgcacatgctgttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacctccagcaaagggcactatggctg 39476413  T
Q  114 caccttctgattacactcttt 134  Q
    |||| || |||||| ||||||    
T  39476414 caccctcggattaccctcttt 39476434  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 39484065 - 39484185
Alignment:
Q  14 gatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatggctg 113  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||||| | |||||| |||||||| ||||||||   |  ||||||| |||||||||    
T  39484065 gatgaagatcaggttaaggagatcgcacatgttgttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacctctagtaaagggcaccatggctg 39484164  T
Q  114 caccttctgattacactcttt 134  Q
    |||| ||||||||| ||||||    
T  39484165 caccctctgattactctcttt 39484185  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 39457670 - 39457542
Alignment:
Q  10 tttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 109  Q
    |||||||||||||||||||||||||||||| | |||| | ||||||| ||||| ||  || || |||||||| ||||||||| |||| |||| | |||||    
T  39457670 tttcgatgaggatcaggttaaggagatcgcccttgctgtagagaatactggggtccgatttgtgtggtctctacgtaaaccaccaccgaaggacaccatg 39457571  T
Q  110 gctgcaccttctgattacactctttctga 138  Q
      ||| || ||||||||||||||||||||    
T  39457570 aatgcgccatctgattacactctttctga 39457542  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 39461049 - 39461179
Alignment:
Q  11 ttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaaggg---cgcca 107  Q
    ||||||||||||||| ||||||||||||||||||| |||||| ||||||| | ||| ||| |||||||||| ||||||||   ||| |||||   |||||    
T  39461049 ttcgatgaggatcagattaaggagatcgcacatgccattgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgcca 39461148  T
Q  108 tggctgcaccttctgattacactctttctga 138  Q
    ||| |||||| ||||||||| ||||| ||||    
T  39461149 tggttgcaccctctgattactctcttactga 39461179  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 39470135 - 39470007
Alignment:
Q  10 tttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 109  Q
    ||||||||||||||||||||||| |||||||| |||| | ||||||| ||||| ||   | || |||||||| ||||||||| |||| |||||| |||||    
T  39470135 tttcgatgaggatcaggttaaggggatcgcacttgctgtagagaatactggggtccgtattgtgtggtctctacgtaaaccaccacctaagggcaccatg 39470036  T
Q  110 gctgcaccttctgattacactctttctga 138  Q
    | ||| || ||||||||| ||||||||||    
T  39470035 gttgcgccatctgattaccctctttctga 39470007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 39487263 - 39487391
Alignment:
Q  10 tttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 109  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||  || || |||||||| ||||||||  |||| |||||   ||||    
T  39487263 tttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgttttgtgtggtctctgcgtaaaccctcaccgaagggaatcatg 39487362  T
Q  110 gctgcaccttctgattacactctttctga 138  Q
    | | |||| ||||||||| ||||||||||    
T  39487363 gtttcaccctctgattaccctctttctga 39487391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 39472828 - 39472952
Alignment:
Q  10 tttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 109  Q
    |||||| ||||||||||||| | |||| |||   ||||||||||||||||||||||  ||| |||||||||| ||||||||  ||||  ||||| |||||    
T  39472828 tttcgacgaggatcaggttacgcagattgcatgcgctattgagaatagtggggcccggttcatatggtctcttcgtaaacctccaccggagggcaccatg 39472927  T
Q  110 gctgcaccttctgattacactcttt 134  Q
    ||  | || ||||||||| ||||||    
T  39472928 gcctcgccctctgattaccctcttt 39472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 43311905 - 43311777
Alignment:
Q  10 tttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 109  Q
    |||||||||||||||  ||| |||||| ||  ||||||||||||| |||| ||| | |||| | |||||||| || |||||  |||| |||||  |||||    
T  43311905 tttcgatgaggatcaaattagggagattgcgtatgctattgagaaaagtgaggctcgcttcctgtggtctctgcgaaaacccccaccgaagggaaccatg 43311806  T
Q  110 gctgcaccttctgattacactctttctga 138  Q
    | ||   | ||||||||| ||||||||||    
T  43311805 ggtgagacatctgattactctctttctga 43311777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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