View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117R-Insertion-2 (Length: 935)
Name: NF3117R-Insertion-2
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117R-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 495 - 887
Target Start/End: Complemental strand, 36435040 - 36434647
Alignment:
| Q |
495 |
caacactacacattataaaattgaagagcttgagtcccaatttcaaaaccacaaatgagacaaccaaaatgcccaatacattcaaggaagatattcagat |
594 |
Q |
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| T |
36435040 |
caacactacaccttataaaattgaagagcttgagtcccaatttcaaaaccataaatgagagaaccaaaatgcccaatacattcaaggaagacattcagat |
36434941 |
T |
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| Q |
595 |
tccactgttatatccgcttgttgtaaaaacttttgaatagataattcaaggccacaagaaactaccattgatgcactcttcagccttctc--ctttctta |
692 |
Q |
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| T |
36434940 |
tccactgttatatccgcttgttgtaaacacttttgaatagataattcaaggccacaagaaactaccattgatgcactgttcagccttctctcctttctta |
36434841 |
T |
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| Q |
693 |
cattccaacttctaatttcttgtatattgtgagcaacctgtcatgggatgaaagggttctgttcaaaattggaagaacaatcatttcactatgttgcggt |
792 |
Q |
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| T |
36434840 |
cattccaacttctaatttcttgtatattgtgagcaacctgtcatgggatgaaagggttctgttcaaaattggaagaacaatcatttcactatgttacagt |
36434741 |
T |
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| Q |
793 |
tctgtttgtttgtgtgattggtgtcatagtagttatgtcgtytggggttgaattttcaacaattwgttttttgagttgtggggagaraaagcaaa |
887 |
Q |
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| T |
36434740 |
tctgtttgtttgcgtgattggtgtcatagtagttatgtcgtttggggttgaattttcaacaatttgttttttgagttgt-gggagaaaaagcaaa |
36434647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 376
Target Start/End: Complemental strand, 36435530 - 36435166
Alignment:
| Q |
9 |
ctctcgtgttctaagtcaattctaagatgaatatcatcacttaatattgaaggaccacatttataacgtttgtaacacgagatgctggatacacttctaa |
108 |
Q |
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| T |
36435530 |
ctctcgtgttctaagtcaattctaagatcaatatcatcacttaatattgaaggaccacatttttaacgtttgtaacacgagatgctggatacacttctaa |
36435431 |
T |
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| Q |
109 |
tagtaatcttttgaagaccatcttttgatggaaatattcaaaaccgtctttggttgttcaatgcttatctttgaagcatcaagnnnnnnnataaagattt |
208 |
Q |
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| T |
36435430 |
tagtaatcttttgaagatcatcttttgatggaaatattcaaaaccgtctttggttgttcgatgcttatctttgaagcatcaagtttttttataaagattt |
36435331 |
T |
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| Q |
209 |
ttattaatcaataacctagctcacaccagccttttttatcaggaagaatcgaacttgatatctcatggttttcaacactcacacacaccctacgaaccaa |
308 |
Q |
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| T |
36435330 |
ttattaat---taacctagctcacactagcattttttatcaggaagaatcgaacttaatatctcatggttttcaacactcacacacaccctacgaaccaa |
36435234 |
T |
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| Q |
309 |
cactcatactcctcggcttctaggaatggttaaggcaatgcactctgtaacttcctaaagctagattg |
376 |
Q |
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| T |
36435233 |
cactcatactcctcggcttctaggaatggttaaggcaatgcactctgtaacttcctaaagctagattg |
36435166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 406 - 497
Target Start/End: Complemental strand, 36435169 - 36435078
Alignment:
| Q |
406 |
attgttgggaaactaaacagggctcaaaacaggcacatcttccccataccacacatccacaattgaccttcaaaagaacaacccaagctcaa |
497 |
Q |
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| T |
36435169 |
attgttgggaaactaaacagggctcaaaacaggcacatcttccccataccacacatccacaattgaccttcaaaagaacaacccaagctcaa |
36435078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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