View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117R-Insertion-3 (Length: 909)

Name: NF3117R-Insertion-3
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117R-Insertion-3
NF3117R-Insertion-3
[»] chr4 (15 HSPs)
chr4 (287-909)||(48818113-48818744)
chr4 (9-258)||(48818774-48819023)
chr4 (440-568)||(27574562-27574689)
chr4 (439-568)||(6942451-6942580)
chr4 (472-538)||(33977801-33977867)
chr4 (442-531)||(19594460-19594549)
chr4 (472-542)||(40293582-40293652)
chr4 (472-538)||(7162239-7162305)
chr4 (466-530)||(6942259-6942323)
chr4 (472-562)||(2720536-2720625)
chr4 (472-574)||(39835705-39835807)
chr4 (478-530)||(2075190-2075242)
chr4 (466-530)||(17354488-17354552)
chr4 (499-565)||(29431829-29431895)
chr4 (472-558)||(54612611-54612696)
[»] chr3 (14 HSPs)
chr3 (464-557)||(34819734-34819827)
chr3 (439-568)||(33967912-33968041)
chr3 (473-568)||(33640956-33641051)
chr3 (478-568)||(50302985-50303075)
chr3 (437-561)||(51390310-51390433)
chr3 (438-561)||(50164021-50164144)
chr3 (437-546)||(12790089-12790198)
chr3 (472-573)||(55406888-55406989)
chr3 (466-568)||(28958582-28958683)
chr3 (467-557)||(47068885-47068975)
chr3 (466-567)||(52247425-52247526)
chr3 (442-557)||(14998767-14998881)
chr3 (466-568)||(21758269-21758370)
chr3 (477-574)||(28309469-28309565)
[»] chr1 (19 HSPs)
chr1 (437-561)||(36438395-36438519)
chr1 (472-557)||(47949995-47950080)
chr1 (463-568)||(21008199-21008304)
chr1 (472-557)||(50075600-50075685)
chr1 (441-561)||(11908550-11908670)
chr1 (442-568)||(12570080-12570206)
chr1 (448-568)||(14149452-14149571)
chr1 (477-557)||(47445989-47446069)
chr1 (481-568)||(13383047-13383134)
chr1 (472-574)||(24439128-24439230)
chr1 (466-567)||(35652482-35652583)
chr1 (437-557)||(47176746-47176867)
chr1 (472-574)||(7789449-7789550)
chr1 (472-556)||(46288800-46288884)
chr1 (448-521)||(47449226-47449299)
chr1 (482-542)||(30321998-30322058)
chr1 (474-561)||(18033646-18033733)
chr1 (448-538)||(34967700-34967790)
chr1 (466-567)||(10987198-10987299)
[»] chr7 (7 HSPs)
chr7 (438-568)||(2457927-2458057)
chr7 (437-565)||(23031748-23031875)
chr7 (464-539)||(3399226-3399301)
chr7 (441-528)||(36783278-36783365)
chr7 (437-574)||(32546443-32546580)
chr7 (472-561)||(32650065-32650154)
chr7 (487-574)||(44599389-44599476)
[»] chr2 (16 HSPs)
chr2 (473-558)||(28226187-28226272)
chr2 (442-557)||(43664816-43664931)
chr2 (440-558)||(11252583-11252701)
chr2 (437-530)||(43592736-43592829)
chr2 (442-561)||(35813764-35813884)
chr2 (474-557)||(8335244-8335327)
chr2 (482-544)||(13915887-13915950)
chr2 (439-530)||(30560935-30561026)
chr2 (484-567)||(39958842-39958925)
chr2 (466-536)||(9707121-9707191)
chr2 (438-574)||(1687928-1688062)
chr2 (466-530)||(7721621-7721685)
chr2 (465-568)||(4283430-4283533)
chr2 (473-568)||(5578018-5578113)
chr2 (478-568)||(9886853-9886944)
chr2 (483-561)||(33434259-33434337)
[»] chr8 (9 HSPs)
chr8 (437-568)||(12398067-12398198)
chr8 (467-574)||(23736932-23737042)
chr8 (442-542)||(33274295-33274395)
chr8 (442-557)||(40330114-40330229)
chr8 (437-558)||(18310518-18310642)
chr8 (472-558)||(12892616-12892702)
chr8 (441-530)||(30928835-30928924)
chr8 (478-530)||(404423-404474)
chr8 (473-539)||(39400958-39401024)
[»] chr5 (11 HSPs)
chr5 (437-557)||(3494461-3494581)
chr5 (472-557)||(12517116-12517201)
chr5 (442-530)||(17904293-17904381)
chr5 (472-568)||(35470083-35470179)
chr5 (481-574)||(41174141-41174234)
chr5 (510-561)||(18393300-18393351)
chr5 (486-553)||(28993886-28993953)
chr5 (437-557)||(5844370-5844490)
chr5 (524-568)||(11935978-11936022)
chr5 (441-557)||(42207049-42207165)
chr5 (466-528)||(35563117-35563179)
[»] chr6 (2 HSPs)
chr6 (442-568)||(32604515-32604641)
chr6 (442-530)||(1288129-1288217)
[»] scaffold0129 (1 HSPs)
scaffold0129 (437-535)||(37448-37546)
[»] scaffold0172 (1 HSPs)
scaffold0172 (510-574)||(26390-26454)
[»] scaffold0095 (1 HSPs)
scaffold0095 (473-539)||(36478-36544)


Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 287 - 909
Target Start/End: Complemental strand, 48818744 - 48818113
Alignment:
Q  287 ccatgtgcctttctcttaaagatatttgaaaagatcttacta----gtgcctccgatacattctttaaatattttatatcaaaaaattattttnnnnnnn 382  Q
    ||||||||||||||||||| ||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||||           
T  48818744 ccatgtgcctttctcttaa-gatatttgaaaagatcttactaactagtgcctccgatgcattctttaaatattttatatcaaaaaattatttttaaaaaa 48818646  T
Q  383 gttaaatactataattttcaatgcattaaatacataannnnnnnnnnnnnnnnn-----aaggaaaatgctaacttgtgctctttggacacaacataagg 477  Q
    |||||||||||||||||||||||||||||||||||||                      |||| |||||||||||||||| ||| |||||||||||||||    
T  48818645 gttaaatactataattttcaatgcattaaatacataaaaatttattgtttaatttttttaagggaaatgctaacttgtgcccttaggacacaacataagg 48818546  T
Q  478 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaacttttaatg 577  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  48818545 atcttaaaatagaattaaacaataaataatgcattgaaaagataagtttttaaacttttaatgttatgaatgcacaatttccaaagttaaacttttaatg 48818446  T
Q  578 ttatgatacaagttagcaagatctaatttttaaagagggtctaagagacattctttagcattttcatatattattatcgtatcattcgtgaataaacaaa 677  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  48818445 ttatgatacaagttagcaagacctaatttttaaagaggatctaagagagattctttaacattttcatatattattatcgtatcattcgtgaataaagaaa 48818346  T
Q  678 a-tataattattgatatgcggaaataatgattttcattttatatagagaaattgattgataacgtattaacgtgtgtgcattcactgctatataagatca 776  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48818345 aatataattattgatatgcggaaataatgattttcattttatatagagaaattgattgataacctattaacgtgtgtgcattcactgctatataagatca 48818246  T
Q  777 ccctgaggagcttacatttcacacaacaaacaccaagacatagtgaagcttgttatagcgcacaatggctttttccaccaccatgaaacttgttcttttc 876  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  48818245 ccctgaggagcttacatttcacacaacaaacaccaagacatagtgaagcttgttatagctcaccatggctttttccaccaccatgaaacttgttcttttc 48818146  T
Q  877 tctgcactcacactcctctcattccaatcagtg 909  Q
    |||||||||||||||||||||||||||||||||    
T  48818145 tctgcactcacactcctctcattccaatcagtg 48818113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 48819023 - 48818774
Alignment:
Q  9 caattgaaccagaatcataaaagatctctctctaaccaagaatcgttccaaaaggaaaaactttcaccattaccaactcgatgtcctataccacttgtaa 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||    
T  48819023 caattgaaccagaatcataaaagatctctctctaaccaaggatcgttccaaaaggaaaaactttcaccattaccaactcgatgtcctataccatctggaa 48818924  T
Q  109 ccagtcaccttcaaactccataacaccccctttgaaccgctccctaatgcgcccactttctacctcatatctgtcaaaactttataccataactcacctt 208  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48818923 ccagtcaccttcaaactccccaacaccccctttgaaccgctccctaatgcacccactttctacctcatatttgtcaaaactttataccataactcacctt 48818824  T
Q  209 tgtcaacaagaacacgccgacaccaatttcctgttaaagaaacagttcac 258  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48818823 tgtcaacaagaacacgccgacaccaatttcttgttaaagaaacagttcac 48818774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 440 - 568
Target Start/End: Original strand, 27574562 - 27574689
Alignment:
Q  440 gaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 539  Q
    ||||||| |||||| ||| ||||  |||||| |||| ||||||||||||||||||||  ||||||| || |||||||||||||| ||||||  ||||||     
T  27574562 gaaaatgttaacttatgc-ctttacacacaagataaagatcttaaaatagaattaaataataaatattgaattgaaaagataaaattttaagattttaaa 27574660  T
Q  540 gttatgagtgcacaatttccaaagttaaa 568  Q
    ||||||| ||||||||||  |||||||||    
T  27574661 gttatgaatgcacaatttttaaagttaaa 27574689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 439 - 568
Target Start/End: Complemental strand, 6942580 - 6942451
Alignment:
Q  439 ggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 538  Q
    |||||||| ||| |||||| ||| || ||||| ||||  |||| ||||||||||||||  ||||||   ||||||||||||||| |||||||||||||||    
T  6942580 ggaaaatgttaatttgtgcccttagggcacaagataaaaatctaaaaatagaattaaaaaataaatgtggcattgaaaagataagtttttaaacttttaa 6942481  T
Q  539 ggttatgagtgcacaatttccaaagttaaa 568  Q
    | | | || ||||||||||||||| |||||    
T  6942480 gatcaagaatgcacaatttccaaaattaaa 6942451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 472 - 538
Target Start/End: Complemental strand, 33977867 - 33977801
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 538  Q
    |||||||| |||||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  33977867 ataaggatattaaaatataattaaaaaataaatattgcattgaaaagataaatttttaaacttttaa 33977801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 442 - 531
Target Start/End: Complemental strand, 19594549 - 19594460
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaa 531  Q
    ||||||||||||||||  || || ||||| ||| ||||||||||||||||||| || ||||||| || ||||||||||||| ||||||||    
T  19594549 aaatgctaacttgtgccgttaggtcacaagatagggatcttaaaatagaattatacaataaatattgtattgaaaagataagtttttaaa 19594460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 40293582 - 40293652
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggtt 542  Q
    |||| ||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||  ||||||||||    
T  40293582 ataaagatcttaaaatagaattaaataataaatattgcgttgaaaagataaatttttaagattttaaggtt 40293652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 538
Target Start/End: Complemental strand, 7162305 - 7162239
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 538  Q
    |||||||||||||||||||||||||  ||||||| | ||||||| |||||| | |||||||||||||    
T  7162305 ataaggatcttaaaatagaattaaaaaataaatattacattgaagagataattgtttaaacttttaa 7162239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 6942323 - 6942259
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    ||||| |||| |||||||||||| |||||||| ||||||| || ||||||||||||| |||||||    
T  6942323 cacaagataaagatcttaaaataaaattaaacaataaatattgtattgaaaagataagtttttaa 6942259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 562
Target Start/End: Original strand, 2720536 - 2720625
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaa 562  Q
    |||||||||| ||||||||||||||   |||||| ||||||||| |||||| ||||||| | |||||| || | | |||||||||||||||    
T  2720536 ataaggatctaaaaatagaattaaaaattaaatattgcattgaagagataactttttaagc-tttaagattctaaatgcacaatttccaaa 2720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 574
Target Start/End: Original strand, 39835705 - 39835807
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 571  Q
    |||||||| | ||||||||||||||  ||||||| | |||| ||||||||| ||||||  |||||||| |||||| | ||||||||  ||| ||||| ||    
T  39835705 ataaggatttaaaaatagaattaaaaaataaatattacatttaaaagataagtttttaggcttttaagattatgaatacacaatttataaaattaaattt 39835804  T
Q  572 tta 574  Q
    |||    
T  39835805 tta 39835807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 530
Target Start/End: Original strand, 2075190 - 2075242
Alignment:
Q  478 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    |||||||||||||||||||  | ||||| |||||| |||||||||||||||||    
T  2075190 atcttaaaatagaattaaataaaaaatattgcattaaaaagataaatttttaa 2075242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 17354488 - 17354552
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    ||||| |||| |||||||||||||||| |||  ||||||| || ||||||||||||| |||||||    
T  17354488 cacaagataaagatcttaaaatagaatcaaataataaatattgtattgaaaagataagtttttaa 17354552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 565
Target Start/End: Complemental strand, 29431895 - 29431829
Alignment:
Q  499 ataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 565  Q
    ||||||| || ||||||| |||||||||||||  |||||| ||| ||| |||||||||| |||||||    
T  29431895 ataaatattgtattgaaatgataaatttttaagtttttaaagttgtgaatgcacaattttcaaagtt 29431829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 54612696 - 54612611
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttc 558  Q
    |||||||||| ||| ||||||||||  ||||||  ||||||||||| ||||  ||||||||||||||  |||||| | |||||||||    
T  54612696 ataaggatctaaaactagaattaaaa-ataaatgttgcattgaaaatataagattttaaacttttaaatttatgaatacacaatttc 54612611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 464 - 557
Target Start/End: Original strand, 34819734 - 34819827
Alignment:
Q  464 gacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 557  Q
    ||||||| ||||| |||||||||||||||||||| ||||| | || ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  34819734 gacacaagataagaatcttaaaatagaattaaacaataaaaattgtattgaaaagataaattttttaacttttaaggttatgaatgcacaattt 34819827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 439 - 568
Target Start/End: Original strand, 33967912 - 33968041
Alignment:
Q  439 ggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 538  Q
    |||||||| |||||||||| |||  | ||||| |||||||||||| ||||||| ||||| ||||||| || ||| |||| |||| |||||||  ||||||    
T  33967912 ggaaaatgttaacttgtgcccttaaggcacaagataaggatcttataatagaaataaacaataaatattgtattaaaaatataactttttaagtttttaa 33968011  T
Q  539 ggttatgagtgcacaatttccaaagttaaa 568  Q
    |||||||| |||||||||||||| ||||||    
T  33968012 ggttatgaatgcacaatttccaatgttaaa 33968041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 33641051 - 33640956
Alignment:
Q  473 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 568  Q
    ||||||||||||||||||||||||| ||||||| || |||||||| |||| |||||||  |||||| ||||||| |||| |||||| ||| |||||    
T  33641051 taaggatcttaaaatagaattaaacaataaatattgtattgaaaatataagtttttaagattttaaagttatgaatgcaaaatttctaaaattaaa 33640956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 568
Target Start/End: Original strand, 50302985 - 50303075
Alignment:
Q  478 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 568  Q
    ||||||||||||||  |||| ||||||| || |||||||| |||| ||||| |||||||||| |||||| |||||||||||||| ||||||    
T  50302985 atcttaaaatagaaacaaacaataaatattgtattgaaaatataagtttttgaacttttaagattatgaatgcacaatttccaaggttaaa 50303075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 437 - 561
Target Start/End: Complemental strand, 51390433 - 51390310
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    ||||| |||| |||||||||| ||  |||||||| ||||| |||| ||||||| ||||||  ||||||  ||||| ||||||||||| |||||| |||||    
T  51390433 aaggagaatgttaacttgtgccctaaggacacaagataagaatctaaaaatagtattaaagaataaatgttgcatcgaaaagataaa-ttttaacctttt 51390335  T
Q  537 aaggttatgagtgcacaatttccaa 561  Q
    ||  |||||| ||||||||||||||    
T  51390334 aaaattatgaatgcacaatttccaa 51390310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 561
Target Start/End: Complemental strand, 50164144 - 50164021
Alignment:
Q  438 aggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttta 537  Q
    ||||||||| |||||||||| ||| || ||||| |||||||||| ||| | ||||||||  ||||||  || |||||||||||||| ||||||  ||||     
T  50164144 aggaaaatgttaacttgtgcccttagggcacaagataaggatctaaaagtggaattaaaaaataaatgttgtattgaaaagataaacttttaagtttttc 50164045  T
Q  538 aggttatgagtgcacaatttccaa 561  Q
    |  |||||| ||||||||||||||    
T  50164044 aaattatgaatgcacaatttccaa 50164021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 546
Target Start/End: Complemental strand, 12790198 - 12790089
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    |||| |||||||||||||| |  || || ||||| ||||  |||||||||||| ||||||  ||||||| || |||||||||||||||||||||  ||||    
T  12790198 aagggaaatgctaacttgtacctttaggccacaatataaatatcttaaaataggattaaataataaatattgtattgaaaagataaatttttaagatttt 12790099  T
Q  537 aaggttatga 546  Q
     |||||||||    
T  12790098 taggttatga 12790089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 472 - 573
Target Start/End: Complemental strand, 55406989 - 55406888
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 571  Q
    ||||||||||||||||||||||||||  |||||| || |||| ||| |||| |||| ||  |||||||||||| | ||||||||||  ||||||||| ||    
T  55406989 ataaggatcttaaaatagaattaaacactaaatattgtattggaaaaataagttttaaagtttttaaggttataaatgcacaatttttaaagttaaattt 55406890  T
Q  572 tt 573  Q
    ||    
T  55406889 tt 55406888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 568
Target Start/End: Complemental strand, 28958683 - 28958582
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 565  Q
    ||||| ||||||||||||||| |||| ||||| |||| || || |||||||||||||| |||||| |||||||||| |||| |  ||| ||| |||||||    
T  28958683 cacaagataaggatcttaaaacagaagtaaacaataattattgtattgaaaagataaa-ttttaagcttttaaggtcatgaatatacacttttcaaagtt 28958585  T
Q  566 aaa 568  Q
    |||    
T  28958584 aaa 28958582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 557
Target Start/End: Original strand, 47068885 - 47068975
Alignment:
Q  467 acaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 557  Q
    |||| |||||||||||| ||||||| | ||  ||||||| || ||| ||||||||| |||||||  |||||| ||||||| ||||||||||    
T  47068885 acaagataaggatcttagaatagaaatcaataataaatattgtattaaaaagataattttttaagtttttaaagttatgaatgcacaattt 47068975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 567
Target Start/End: Original strand, 52247425 - 52247526
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 565  Q
    ||||| |||| ||| ||||||||||||||||| ||||||| || ||| |||||| || | ||||  ||||||||  ||||| ||||||||||| ||| ||    
T  52247425 cacaagataaagattttaaaatagaattaaacaataaatattgtattaaaaagacaagtatttaggcttttaagaatatgaatgcacaatttctaaaatt 52247524  T
Q  566 aa 567  Q
    ||    
T  52247525 aa 52247526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 557
Target Start/End: Complemental strand, 14998881 - 14998767
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 541  Q
    ||||||||||||||   |||  ||||||| ||||| ||| |||||||||||||||  ||| ||| |  |||||||||| || |||||||| ||||||| |    
T  14998881 aaatgctaacttgtatccttatgacacaagataagaatcataaaatagaattaaaaaatatatattatattgaaaaga-aagtttttaaatttttaagat 14998783  T
Q  542 tatgagtgcacaattt 557  Q
    ||||| || |||||||    
T  14998782 tatgaatgtacaattt 14998767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 568
Target Start/End: Original strand, 21758269 - 21758370
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 565  Q
    ||||| ||||| |||||||||||||||| ||  ||||||| || ||| ||||| ||| | ||||| ||||| ||||  ||| |||| |||||||||||||    
T  21758269 cacaagataagaatcttaaaatagaatt-aataataaatattgtattaaaaagttaactatttaaccttttgaggtattgaatgcataatttccaaagtt 21758367  T
Q  566 aaa 568  Q
    |||    
T  21758368 aaa 21758370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 574
Target Start/End: Original strand, 28309469 - 28309565
Alignment:
Q  477 gatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 574  Q
    ||||||||||||||| ||||  ||||||| || |||||||| |||| ||||| ||  ||||||||||||  || |||||||  ||||||||| |||||    
T  28309469 gatcttaaaatagaactaaaa-ataaatattgtattgaaaaaataagttttttaatctttaaggttatgtatgtacaatttttaaagttaaattttta 28309565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 437 - 561
Target Start/End: Complemental strand, 36438519 - 36438395
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    |||||||||| |||||||||| ||| || ||||| |||||||||||||||||||||| ||  ||||||| ||||||||||| |||| |||| ||  ||||    
T  36438519 aaggaaaatgttaacttgtgcccttagggcacaaaataaggatcttaaaatagaatttaaaaataaatattgcattgaaaatataagttttgaagttttt 36438420  T
Q  537 aaggttatgagtgcacaatttccaa 561  Q
    |||||||||| |||| |||||||||    
T  36438419 aaggttatgaatgcaaaatttccaa 36438395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 472 - 557
Target Start/End: Original strand, 47949995 - 47950080
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 557  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||| || ||||||| ||||||||||||||| ||||||||||    
T  47949995 ataaggatcttaaaatagaattaaaaaataaatattgcattgaaaagacaagtttttaagcttttaaggttatgaatgcacaattt 47950080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 463 - 568
Target Start/End: Complemental strand, 21008304 - 21008199
Alignment:
Q  463 ggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaa 562  Q
    |||||||| ||||| |||||||||||||||||||  ||||||| || ||||||||||||| |||||||  |||||||||  ||| ||||| |||| ||||    
T  21008304 ggacacaatataagaatcttaaaatagaattaaataataaatattgtattgaaaagataactttttaagtttttaaggtattgaatgcacgattttcaaa 21008205  T
Q  563 gttaaa 568  Q
    ||||||    
T  21008204 gttaaa 21008199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 50075685 - 50075600
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 557  Q
    |||| ||| ||||||||||| ||||| ||||||| ||| |||||||||||| |||||||||||||||| |||||| ||||||||||    
T  50075685 ataaagattttaaaatagaaataaacaataaatattgcgttgaaaagataactttttaaacttttaagattatgaatgcacaattt 50075600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 441 - 561
Target Start/End: Complemental strand, 11908670 - 11908550
Alignment:
Q  441 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaagg 540  Q
    |||||| |||||| ||||||  |  ||||| |||| ||||| || |||||||||||  ||||||  |||||||||||||||| |||||||||||||||      
T  11908670 aaaatgttaacttatgctctaagagcacaatataaagatctaaatatagaattaaaaaataaatgttgcattgaaaagataagtttttaaacttttaaaa 11908571  T
Q  541 ttatgagtgcacaatttccaa 561  Q
    |||||| ||||||||||||||    
T  11908570 ttatgaatgcacaatttccaa 11908550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 568
Target Start/End: Original strand, 12570080 - 12570206
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 541  Q
    ||||| |||||||||| ||  || ||||| |||| |||||||||||||||  |||| ||||||| || ||| |||| |||| ||||| |||||||||| |    
T  12570080 aaatgttaacttgtgccctaagggcacaagataaagatcttaaaatagaaacaaacaataaatattgtattaaaaatataagtttttgaacttttaagat 12570179  T
Q  542 tatgagtgcacaatttccaaagttaaa 568  Q
    ||||| |||||||||| ||| ||||||    
T  12570180 tatgaatgcacaattttcaaggttaaa 12570206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 448 - 568
Target Start/End: Original strand, 14149452 - 14149571
Alignment:
Q  448 taacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgag 547  Q
    |||||||||| ||| || || || ||||| |||||||||||||| ||||| |||| || || |||||||||| ||| |||||| |||||||||| ||||     
T  14149452 taacttgtgcccttagggcataagataagaatcttaaaatagaagtaaacaataattattgtattgaaaaga-aaaattttaagcttttaaggtcatgaa 14149550  T
Q  548 tgcacaatttccaaagttaaa 568  Q
    | |||||||| ||||||||||    
T  14149551 tacacaattttcaaagttaaa 14149571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 477 - 557
Target Start/End: Complemental strand, 47446069 - 47445989
Alignment:
Q  477 gatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 557  Q
    ||||| ||||||||||||||  ||||||| || ||||||||||||||||||| |||||||||| |||| | ||||||||||    
T  47446069 gatctaaaaatagaattaaataataaatattgtattgaaaagataaattttttaacttttaagattataaatgcacaattt 47445989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 568
Target Start/End: Original strand, 13383047 - 13383134
Alignment:
Q  481 ttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 568  Q
    ||||||||||| ||||| ||||||| || ||| |||| |||| |||||||||||||||| |||||| |||||||||| | ||||||||    
T  13383047 ttaaaatagaaataaacaataaatattgtattaaaaatataagtttttaaacttttaagattatgaatgcacaattttcgaagttaaa 13383134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 472 - 574
Target Start/End: Original strand, 24439128 - 24439230
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 571  Q
    ||||| |||| || |||||||||||  ||||||| || ||| |||| |||| |||||||||||||||| |||||| |||||||||| |||| ||||| ||    
T  24439128 ataagaatctaaatatagaattaaaaaataaatattgtattaaaaaaataagtttttaaacttttaagattatgaatgcacaattttcaaaattaaattt 24439227  T
Q  572 tta 574  Q
    |||    
T  24439228 tta 24439230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 567
Target Start/End: Original strand, 35652482 - 35652583
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 565  Q
    ||||| |||| |||||||||||  |||||||  ||||||| |||||||||||||||| |||||||  | ||||||||  || |||||||||| |||||||    
T  35652482 cacaagataaagatcttaaaattaaattaaataataaatattgcattgaaaagataagtttttaagttgttaaggtttagaatgcacaattttcaaagtt 35652581  T
Q  566 aa 567  Q
    ||    
T  35652582 aa 35652583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 557
Target Start/End: Complemental strand, 47176867 - 47176746
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaatt-aaactataaataatgcattgaaaagataaatttttaaacttt 535  Q
    |||||||||| |||||||||| ||  |  ||||| |||||||||| ||||||||||| |||  ||||||| ||||||||||| || | |||||| |||||    
T  47176867 aaggaaaatgttaacttgtgccctaagagcacaagataaggatctaaaaatagaatttaaaaaataaatattgcattgaaaatatgagtttttatacttt 47176768  T
Q  536 taaggttatgagtgcacaattt 557  Q
     ||| |||||| ||||||||||    
T  47176767 aaagattatgaatgcacaattt 47176746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 574
Target Start/End: Original strand, 7789449 - 7789550
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactt 571  Q
    |||| ||||||||||| ||||||||  ||||||| ||||||||||| ||||||||||||  |||| | ||||| | |||||||||| |||  ||||||||    
T  7789449 ataatgatcttaaaatggaattaaaaaataaatattgcattgaaaa-ataaatttttaagattttgaagttataaatgcacaattttcaagattaaactt 7789547  T
Q  572 tta 574  Q
    |||    
T  7789548 tta 7789550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 46288800 - 46288884
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatt 556  Q
    |||||||||| ||||||||||||||| ||||||| |  ||||| || |||| |||||||  |||||||||||||| || ||||||    
T  46288800 ataaggatctcaaaatagaattaaacaataaatattatattgataaaataagtttttaagtttttaaggttatgaatgtacaatt 46288884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 47449299 - 47449226
Alignment:
Q  448 taacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagata 521  Q
    |||||||||| ||| || ||||| ||||| ||||||||||||||||||   ||||||| || ||||||||||||    
T  47449299 taacttgtgcccttaggccacaagataagaatcttaaaatagaattaactaataaatattgtattgaaaagata 47449226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 482 - 542
Target Start/End: Complemental strand, 30322058 - 30321998
Alignment:
Q  482 taaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggtt 542  Q
    |||||||||||| ||  ||||||| |||||||||||||||| |||||||  ||||||||||    
T  30322058 taaaatagaattgaataataaatattgcattgaaaagataagtttttaagattttaaggtt 30321998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 561
Target Start/End: Original strand, 18033646 - 18033733
Alignment:
Q  474 aaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 561  Q
    |||||||| ||  ||||||||||  ||||||  |||||| |||||||||||||||||  ||||||| |||| | |||||||| |||||    
T  18033646 aaggatctaaatgtagaattaaaaaataaatgttgcattaaaaagataaatttttaagtttttaagattataaatgcacaatatccaa 18033733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 34967790 - 34967700
Alignment:
Q  448 taacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaa 538  Q
    |||||||||| ||| || |||||  |||| | || ||||||||||||||  |||| |  ||||||||||| ||||| ||||||||||||||    
T  34967790 taacttgtgcccttggggcacaagttaagaaactaaaaatagaattaaaagataacttttgcattgaaaatataaaattttaaacttttaa 34967700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 567
Target Start/End: Original strand, 10987198 - 10987299
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagtt 565  Q
    ||||| |||| |||||||||||||| |  ||  ||||||| |||||||||||||||| |||||||  |||||| |||   | |||||||||| ||| |||    
T  10987198 cacaagataaagatcttaaaatagattccaataataaatattgcattgaaaagataagtttttaagattttaaagtttaaaatgcacaattttcaaggtt 10987297  T
Q  566 aa 567  Q
    ||    
T  10987298 aa 10987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 438 - 568
Target Start/End: Complemental strand, 2458057 - 2457927
Alignment:
Q  438 aggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttta 537  Q
    ||||||||| |||||||| | |||  | || || |||||||||||||||||||||||||| || |||| || |||||||||||||  | |||| ||||||    
T  2458057 aggaaaatgttaacttgtacccttaaggcataaaataaggatcttaaaatagaattaaacaatcaatattgtattgaaaagataagctcttaagctttta 2457958  T
Q  538 aggttatgagtgcacaatttccaaagttaaa 568  Q
    ||||||||| ||||||||| |||| ||||||    
T  2457957 aggttatgaatgcacaattcccaatgttaaa 2457927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 437 - 565
Target Start/End: Complemental strand, 23031875 - 23031748
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    |||| ||||| |||||| ||| ||| || ||||| |||| ||||||||||||||||| ||| ||||||| || ||| |||||||||||||||||  ||||    
T  23031875 aagggaaatgttaacttctgc-cttagggcacaagataatgatcttaaaatagaattgaacaataaatattgtattaaaaagataaatttttaagttttt 23031777  T
Q  537 aaggttatgagtgcacaatttccaaagtt 565  Q
    |||||| ||| |||||||||| |||||||    
T  23031776 aaggttgtgaatgcacaattttcaaagtt 23031748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 464 - 539
Target Start/End: Original strand, 3399226 - 3399301
Alignment:
Q  464 gacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 539  Q
    ||||||| |||||||||| ||||||||| | ||  ||||||| ||||||||||| |||| ||||||||||||||||    
T  3399226 gacacaagataaggatctaaaaatagaaatgaaaaataaatattgcattgaaaacataagtttttaaacttttaag 3399301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 441 - 528
Target Start/End: Complemental strand, 36783365 - 36783278
Alignment:
Q  441 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaattttt 528  Q
    |||||| |||||||||| ||  || ||||| ||||| |||||||||||||||||||  ||||||| || ||||||||||||| |||||    
T  36783365 aaaatgttaacttgtgcactaagggcacaagataagaatcttaaaatagaattaaataataaatattgtattgaaaagataacttttt 36783278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 437 - 574
Target Start/End: Complemental strand, 32546580 - 32546443
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    |||||||||| |||||||||||||  || || || |||||||||| ||| |  |||||||  ||||||  | ||||||||||||||||||||||  ||||    
T  32546580 aaggaaaatgttaacttgtgctctaagggcataagataaggatctaaaagtgaaattaaaaaataaatgttacattgaaaagataaatttttaacttttt 32546481  T
Q  537 aaggttatgagtgcacaatttccaaagttaaactttta 574  Q
    ||  |||| | | ||||||||||||  ||||| |||||    
T  32546480 aaaattataaattcacaatttccaatattaaattttta 32546443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 472 - 561
Target Start/End: Original strand, 32650065 - 32650154
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 561  Q
    |||||||||| ||| | ||||||||  ||||||  || |||||||||||||||||||||  ||||||| |||||  ||||||||||||||    
T  32650065 ataaggatctaaaagtggaattaaaaaataaatgttgtattgaaaagataaatttttaagtttttaagattatgcatgcacaatttccaa 32650154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 574
Target Start/End: Original strand, 44599389 - 44599476
Alignment:
Q  487 tagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 574  Q
    ||||||||||  ||||||| || |||||||| |||| |||||||  |||||||||||| | ||||||||||  || |||||| |||||    
T  44599389 tagaattaaataataaatattgtattgaaaatataagtttttaagattttaaggttataaatgcacaatttttaaggttaaattttta 44599476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 28226272 - 28226187
Alignment:
Q  473 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttc 558  Q
    ||||||||||||||||||||||||| ||||||| |  ||||||||||||| |||||||||||||||| |||||| | |||||||||    
T  28226272 taaggatcttaaaatagaattaaacaataaatattatattgaaaagataagtttttaaacttttaagattatgaatacacaatttc 28226187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 442 - 557
Target Start/End: Complemental strand, 43664931 - 43664816
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 541  Q
    |||||||||| ||||| ||| ||| |||| |||| ||||| ||||||||||||||  ||||||| | ||||||||| |||| |||||||||||||||| |    
T  43664931 aaatgctaacgtgtgcccttaggaaacaagataatgatctaaaaatagaattaaaaaataaatattacattgaaaatataagtttttaaacttttaagat 43664832  T
Q  542 tatgagtgcacaattt 557  Q
    | ||| ||||||||||    
T  43664831 tttgaatgcacaattt 43664816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 440 - 558
Target Start/End: Complemental strand, 11252701 - 11252583
Alignment:
Q  440 gaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 539  Q
    ||||||| |||||||||| ||| || ||||| |||||||||| |||||||||||| |  ||||||  || ||||||||||||| |||| |||||||||||    
T  11252701 gaaaatgttaacttgtgcccttagggcacaagataaggatctaaaaatagaattagaaaataaatggtgtattgaaaagataagttttgaaacttttaag 11252602  T
Q  540 gttatgagtgcacaatttc 558  Q
     |||||| | |||||||||    
T  11252601 attatgaattcacaatttc 11252583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 437 - 530
Target Start/End: Complemental strand, 43592829 - 43592736
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    |||| |||||||||||||||| ||| || ||||| |||| |||||||||||||||| |||| ||||||| || ||||||||||||| |||||||    
T  43592829 aagggaaatgctaacttgtgcccttagggcacaagataaagatcttaaaatagaatgaaacaataaatattgtattgaaaagataagtttttaa 43592736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 35813764 - 35813884
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaaga-taaatttttaaacttttaagg 540  Q
    ||||| |||||||||| ||  || ||||| |||| ||||||||||||||| ||||| ||||||| |  |||||||| | ||| ||||| ||||||||||     
T  35813764 aaatgttaacttgtgccctaagggcacaagataaagatcttaaaatagaaataaacaataaatattatattgaaaatagtaagttttttaacttttaaga 35813863  T
Q  541 ttatgagtgcacaatttccaa 561  Q
    |||||| ||||||||||||||    
T  35813864 ttatgaatgcacaatttccaa 35813884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 474 - 557
Target Start/End: Complemental strand, 8335327 - 8335244
Alignment:
Q  474 aaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 557  Q
    |||||||| ||||||||||||||  ||||||  ||||||||||| |||| |||||||||||||||  |||||| |||| |||||    
T  8335327 aaggatctaaaaatagaattaaaaaataaatgttgcattgaaaatataagtttttaaacttttaacattatgaatgcataattt 8335244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 482 - 544
Target Start/End: Complemental strand, 13915950 - 13915887
Alignment:
Q  482 taaaatagaattaaactataaataat-gcattgaaaagataaatttttaaacttttaaggttat 544  Q
    |||||||||||||||  ||||||| | |||||||||| ||||||||||||||||||||| ||||    
T  13915950 taaaatagaattaaaaaataaatatttgcattgaaaatataaatttttaaacttttaagtttat 13915887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 439 - 530
Target Start/End: Original strand, 30560935 - 30561026
Alignment:
Q  439 ggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    ||||||||||||||||||| ||  || ||||| ||| |||||| ||| ||||||| ||  ||||||  |||||||||||||||| |||||||    
T  30560935 ggaaaatgctaacttgtgccctaagggcacaagatagggatctaaaagtagaatttaaaaataaatgttgcattgaaaagataagtttttaa 30561026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 484 - 567
Target Start/End: Complemental strand, 39958925 - 39958842
Alignment:
Q  484 aaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaa 567  Q
    |||||||| |||||  |||||| || |||||||||||| |||||||| |||||||||| |||| | ||||||||  ||||||||    
T  39958925 aaatagaaataaacactaaatattgtattgaaaagatatatttttaagcttttaaggtcatgaatacacaatttttaaagttaa 39958842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 536
Target Start/End: Complemental strand, 9707191 - 9707121
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    ||||| |||| ||||| ||||||||||||||  ||||||  |||||||||||||||| |||| ||||||||    
T  9707191 cacaagataaagatctaaaaatagaattaaaaaataaatgttgcattgaaaagataagttttaaaactttt 9707121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 574
Target Start/End: Original strand, 1687928 - 1688062
Alignment:
Q  438 aggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttta 537  Q
    ||||||||||||||||||| || |   | |||| |||||||| | |||||| |||||||  |||||   |||||||||||||||| |||||||||||||     
T  1687928 aggaaaatgctaacttgtggtccta--atacaatataaggatttaaaaataaaattaaaaaataaaggttgcattgaaaagataagtttttaaacttttt 1688025  T
Q  538 aggttatgagtgcacaatttccaaagttaaactttta 574  Q
    |  |||||| || |||||||  ||| ||||| |||||    
T  1688026 aaattatgaatgtacaatttttaaaattaaattttta 1688062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 7721685 - 7721621
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    ||||| |||| ||||| ||||||||||||||  ||||||  |||||||||||||||| |||||||    
T  7721685 cacaatataatgatctaaaaatagaattaaaaaataaatgttgcattgaaaagataagtttttaa 7721621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 568
Target Start/End: Complemental strand, 4283533 - 4283430
Alignment:
Q  465 acacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagt 564  Q
    |||||| ||||  ||||| |||||||||||||  ||||||| |  ||| |||| |||| |||||||  ||||||||||||||  |||||||||  |||||    
T  4283533 acacaagataaatatcttgaaatagaattaaataataaatattatattaaaaatataagtttttaagattttaaggttatgaaagcacaatttttaaagt 4283434  T
Q  565 taaa 568  Q
    ||||    
T  4283433 taaa 4283430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 5578113 - 5578018
Alignment:
Q  473 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 568  Q
    ||||||||| |||| |||||||||  ||||||  || |||||||| |||| |||||||||||| ||| |  | | ||||||||||||||| |||||    
T  5578113 taaggatctaaaaagagaattaaaacataaattttgtattgaaaaaataagtttttaaactttcaagatattaaatgcacaatttccaaaattaaa 5578018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 568
Target Start/End: Original strand, 9886853 - 9886944
Alignment:
Q  478 atcttaaaatagaattaaactataaataatgcattgaaaagataa-atttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 568  Q
    |||||||||||||||||||  || |||| || |||||||||||||  ||||| |  |||||| ||||||| |||||||||| ||| ||||||    
T  9886853 atcttaaaatagaattaaataattaatattgtattgaaaagataagttttttcaggttttaatgttatgaatgcacaattttcaaggttaaa 9886944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 483 - 561
Target Start/End: Original strand, 33434259 - 33434337
Alignment:
Q  483 aaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 561  Q
    ||||||||||||||  ||||||  | ||||||||||||||||||| |   ||||||| || ||| ||||||||||||||    
T  33434259 aaaatagaattaaaaaataaatgtttcattgaaaagataaattttaagctttttaagattttgaatgcacaatttccaa 33434337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 568
Target Start/End: Complemental strand, 12398198 - 12398067
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaa-gataaatttttaaacttt 535  Q
    |||| |||||||||| ||||| |||  | ||||| ||||||||||||||||| |||||||  |||||| ||| |||||||| | ||| ||||||| ||||    
T  12398198 aagggaaatgctaacctgtgcccttatg-cacaagataaggatcttaaaatataattaaataataaattatgtattgaaaaagttaagtttttaagcttt 12398100  T
Q  536 taaggttatgagtgcacaatttccaaagttaaa 568  Q
    ||||||||||| || ||||||||||| ||||||    
T  12398099 taaggttatgaatgtacaatttccaaggttaaa 12398067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 467 - 574
Target Start/End: Complemental strand, 23737042 - 23736932
Alignment:
Q  467 acaacataaggatcttaaaatagaattaaactataaataatgc---attgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaag 563  Q
    |||| |||| ||||||||||||||||||||| |||||||||     ||||||||||||| ||||||| ||||||| ||||||| ||||||||||  ||      
T  23737042 acaagataaagatcttaaaatagaattaaacaataaataatattatattgaaaagataagtttttaatcttttaaagttatgaatgcacaatttttaaga 23736943  T
Q  564 ttaaactttta 574  Q
    |||||||||||    
T  23736942 ttaaactttta 23736932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 442 - 542
Target Start/End: Complemental strand, 33274395 - 33274295
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 541  Q
    ||||| |||||||||  ||| || ||||| | || ||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||  |||||||||    
T  33274395 aaatgttaacttgtgtccttagggcacaagagaaagatcttaaaatagaaataaataataaatattgcattgaaaagataaatttttaagattttaaggt 33274296  T
Q  542 t 542  Q
    |    
T  33274295 t 33274295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 557
Target Start/End: Original strand, 40330114 - 40330229
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 541  Q
    ||||||||||||||| | || || ||||| |||| ||| |||||||| || ||||  ||||||| || |||||||| |||| |||||||| ||||||| |    
T  40330114 aaatgctaacttgtgatattagggcacaagataatgatattaaaataaaaataaataataaatattgtattgaaaatataagtttttaaatttttaagat 40330213  T
Q  542 tatgagtgcacaattt 557  Q
    ||||| ||||||||||    
T  40330214 tatgaatgcacaattt 40330229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 437 - 558
Target Start/End: Complemental strand, 18310642 - 18310518
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataat---gcattgaaaagataaatttttaaact 533  Q
    |||| ||||| |||||||| |||||  |  |||| |||| |||||||||||||||||| || |||||||||   | ||||||||||||| ||||||| ||    
T  18310642 aagggaaatgttaacttgttctcttaaggaacaagataaagatcttaaaatagaattagacaataaataatattgtattgaaaagataagtttttaatct 18310543  T
Q  534 tttaaggttatgagtgcacaatttc 558  Q
    ||||| ||||||| || ||||||||    
T  18310542 tttaaagttatgaatgtacaatttc 18310518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 12892702 - 12892616
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttc 558  Q
    |||||||| |||||||| |||||||  ||||||| |  |||||||| |||| |||||||  |||||||||||||| |||| ||||||    
T  12892702 ataaggattttaaaataaaattaaataataaatattatattgaaaatataagtttttaagtttttaaggttatgaatgcataatttc 12892616  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 530
Target Start/End: Complemental strand, 30928924 - 30928835
Alignment:
Q  441 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    |||||| ||| |||||||||| ||| |||| |||||||| ||||||||||||| ||  ||||||| | |||| |||| |||| |||||||    
T  30928924 aaaatgttaatttgtgctcttaggatacaagataaggattttaaaatagaatttaaaaataaatattacattaaaaatataagtttttaa 30928835  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 530
Target Start/End: Complemental strand, 404474 - 404423
Alignment:
Q  478 atcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    |||||||||||||||||||| ||||||| || |||| ||||||||||||||||    
T  404474 atcttaaaatagaattaaacaataaatattgtattg-aaagataaatttttaa 404423  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 539
Target Start/End: Complemental strand, 39401024 - 39400958
Alignment:
Q  473 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 539  Q
    ||||||| | ||||||||||||||  ||||||  |||||||||| ||||| ||||||| ||||||||    
T  39401024 taaggatttaaaaatagaattaaaaaataaatgttgcattgaaatgataagtttttaagcttttaag 39400958  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 557
Target Start/End: Original strand, 3494461 - 3494581
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    |||||||||| ||||||||||  |  |||||||| |||||||||| ||||| ||||||||  ||||||  || ||| |||||||||||||||||  ||||    
T  3494461 aaggaaaatgttaacttgtgccttaaggacacaagataaggatctaaaaatggaattaaaaaataaatgttgtattaaaaagataaatttttaagttttt 3494560  T
Q  537 aaggttatgagtgcacaattt 557  Q
    ||| |||||| ||||||||||    
T  3494561 aagattatgaatgcacaattt 3494581  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 12517201 - 12517116
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaattt 557  Q
    |||||||||||||||||||| ||||| ||||||| |  |||||||| |||||||||||| |||||||| |||||| || |||||||    
T  12517201 ataaggatcttaaaatagaaataaacaataaatattttattgaaaatataaatttttaagcttttaagattatgaatgaacaattt 12517116  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 442 - 530
Target Start/End: Original strand, 17904293 - 17904381
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    ||||| ||||||||||  || || || || |||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||    
T  17904293 aaatgttaacttgtgcctttagggcataagataaggatcttaaaatagaattaaacaataaaaattgtattgaaaagataaatttttaa 17904381  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 472 - 568
Target Start/End: Original strand, 35470083 - 35470179
Alignment:
Q  472 ataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 568  Q
    ||||| |||||||||||||||||||| |||| || || |||||||||||||||| |||| |||||| || ||||| || ||||||| ||| ||||||    
T  35470083 ataagaatcttaaaatagaattaaacaataagtattgtattgaaaagataaattattaagcttttacgggtatgaatgaacaattttcaaggttaaa 35470179  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 481 - 574
Target Start/End: Complemental strand, 41174234 - 41174141
Alignment:
Q  481 ttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 574  Q
    ||||||||||||||||  ||||||| || |||||||| |||| |||||||  ||||||| |||||| || ||||||| ||| |||||| |||||    
T  41174234 ttaaaatagaattaaataataaatattgtattgaaaaaataagtttttaagattttaagtttatgaatgtacaattttcaaggttaaattttta 41174141  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 18393351 - 18393300
Alignment:
Q  510 attgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaa 561  Q
    ||||||||||||| |||||||| |||||||||||| | ||||||||||||||    
T  18393351 attgaaaagataagtttttaaatttttaaggttataaatgcacaatttccaa 18393300  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 28993886 - 28993953
Alignment:
Q  486 atagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggttatgagtgcaca 553  Q
    |||||||||||| ||||||| || |||| ||| |||| ||||||||||||| ||||||||| ||||||    
T  28993886 atagaattaaacaataaatattgtattgtaaatataagtttttaaacttttcaggttatgaatgcaca 28993953  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 437 - 557
Target Start/End: Complemental strand, 5844490 - 5844370
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaactttt 536  Q
    |||||||||| |||||||| ||||  || || || ||||||| || ||||||||||||||  ||||||  ||||||||||| |||| |||| |||  |||    
T  5844490 aaggaaaatgataacttgtactctacgggcataagataaggacctaaaaatagaattaaaaaataaatgctgcattgaaaatataagttttaaaatcttt 5844391  T
Q  537 aaggttatgagtgcacaattt 557  Q
    ||| || ||| ||||| ||||    
T  5844390 aagattgtgattgcacgattt 5844370  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 568
Target Start/End: Complemental strand, 11936022 - 11935978
Alignment:
Q  524 tttttaaacttttaaggttatgagtgcacaatttccaaagttaaa 568  Q
    |||||||||||||||||||| || |||||||||| ||||||||||    
T  11936022 tttttaaacttttaaggttacgaatgcacaattttcaaagttaaa 11935978  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 441 - 557
Target Start/End: Original strand, 42207049 - 42207165
Alignment:
Q  441 aaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaagg 540  Q
    ||||||||||||| ||||||  |||||||| |||| ||||| |||||| ||||||   ||||||  ||||||||||| ||||  |||| |  ||||||      
T  42207049 aaaatgctaacttatgctctaaggacacaagataaagatctaaaaataaaattaagaaataaatgttgcattgaaaatataaggttttgagtttttaaaa 42207148  T
Q  541 ttatgagtgcacaattt 557  Q
    |||||| ||||||||||    
T  42207149 ttatgaatgcacaattt 42207165  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 35563179 - 35563117
Alignment:
Q  466 cacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaattttt 528  Q
    ||||| |||| ||||||||||||||||||||  ||||||| | ||||||||| |||| |||||    
T  35563179 cacaagataaagatcttaaaatagaattaaataataaatattacattgaaaatataagttttt 35563117  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 568
Target Start/End: Complemental strand, 32604641 - 32604515
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaaggt 541  Q
    ||||| ||||||||||  || || ||||| || | ||||||||||||||| ||||| ||||||| || |||||||| |||||||||||| || ||| | |    
T  32604641 aaatgttaacttgtgcctttagggcacaagattacgatcttaaaatagaaataaacaataaatattgtattgaaaatataaatttttaagctgttaggat 32604542  T
Q  542 tatgagtgcacaatttccaaagttaaa 568  Q
    ||||| |||||||||| ||| ||||||    
T  32604541 tatgaatgcacaattttcaatgttaaa 32604515  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 442 - 530
Target Start/End: Original strand, 1288129 - 1288217
Alignment:
Q  442 aaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaa 530  Q
    ||||||||| |||||| ||| ||| |||| |||| ||| |||||||||||||||| |||||||| || |||||||| |||| |||||||    
T  1288129 aaatgctaatttgtgcacttaggatacaaaataaagattttaaaatagaattaaattataaatattgtattgaaaatataagtttttaa 1288217  T

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Target: scaffold0129 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 535
Target Start/End: Complemental strand, 37546 - 37448
Alignment:
Q  437 aaggaaaatgctaacttgtgctctttggacacaacataaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttt 535  Q
    |||||||||| |||||| ||| |||  | ||||| ||||| || ||||||||||||||||  ||||||| ||||||||||| |||| | ||||||||||    
T  37546 aaggaaaatgttaacttatgcccttgtggcacaagataagaatattaaaatagaattaaaaaataaatattgcattgaaaatataagtgtttaaacttt 37448  T

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Target: scaffold0172 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 510 - 574
Target Start/End: Original strand, 26390 - 26454
Alignment:
Q  510 attgaaaagataaatttttaaacttttaaggttatgagtgcacaatttccaaagttaaactttta 574  Q
    ||||| || |||||||||||| ||||||||||||||| |||||||||| | | |||||| |||||    
T  26390 attgataatataaatttttaatcttttaaggttatgaatgcacaattttcgaggttaaattttta 26454  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 539
Target Start/End: Original strand, 36478 - 36544
Alignment:
Q  473 taaggatcttaaaatagaattaaactataaataatgcattgaaaagataaatttttaaacttttaag 539  Q
    ||||||| | ||||||||||||||  ||||||  |||||||||| ||||| ||||||| ||||||||    
T  36478 taaggatttaaaaatagaattaaaaaataaatgttgcattgaaatgataagtttttaagcttttaag 36544  T

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