View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117R-Insertion-4 (Length: 842)
Name: NF3117R-Insertion-4
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117R-Insertion-4 |
 | |
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| [»] chr7 (6 HSPs) |
| |
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| [»] chr2 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 698; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 9 - 842
Target Start/End: Original strand, 39652651 - 39653492
Alignment:
| Q |
9 |
agaataataattatatgagtaaacaaggtactgcaaatataatttctaaattctaacatagtcttaatcaactatttatttttacctggccacagtgtct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39652651 |
agaataataattatatgagtaaacaaggtactgcaaatataatttctaaattctaacatagtcttaatcaactatttatttttacctggccacagtgtct |
39652750 |
T |
|
| Q |
109 |
ttcatgaggggttgaagaataaggaaaattgccacaaagatgccgagaatgaggatagtctctgcatgcaatctgcaagtcaaaaacaaaattaacatcc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39652751 |
ctcatgaggggttgaagaataaggaaaattgccacaaagatgccgagaatgaggatagtctctgcatgcaatctgcaagtcaaaaacaaaattaacatcc |
39652850 |
T |
|
| Q |
209 |
acaactagatgttgctgatatatcttcaatcataagccnnnnnnn-gtgtgcaaaccataattctgagtatataaagcacatgcatgataaccaagacat |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39652851 |
acaactagatgttgctgatataacttcaatcataagccaaaaaaaagtgtgcaaaccataattctgagtatataaagcacatgcatgataaccaagacat |
39652950 |
T |
|
| Q |
308 |
ctagggtagaacttatctttgaaaaagaaagtgcaagcagtaatgttgtaacaaaaataaatccttaaatctcagtttgaataaggtgtgaatagccaa- |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39652951 |
ctagggtagaacttatctttgaaaaagaaagtgcaaacagtaatgttgtaacaaaaataaatccttaaatctcagtttgaataaggtgtgaatagccaaa |
39653050 |
T |
|
| Q |
407 |
ttttggtgcctaaaattgtaaaggtcatccttgaa---------atttctagatgatccttaaaattgaaaattatcaatcaaattagtcattctgaaac |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39653051 |
ttttggtgcctaaaattgtaaaggtcatccttgaaatttatgaaatttctagatgatccttaaaattgaaaattatcaaacaaattagtcattctgaaac |
39653150 |
T |
|
| Q |
498 |
aaaagactaatgtatttcgagattttcagtttcacgtgccattttggcattttcttaagtttggcaattatattaccaagttctacaatataaaggactg |
597 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39653151 |
aaacgactaatgtatttggagattttcagtttcacgtgccattttggcattttcttaagtttggcaattatattagcaagttctacaatataaaggactg |
39653250 |
T |
|
| Q |
598 |
agttagtaattcgctcaatgaattgatatgtattgcaccgtcaaacacaattctcaaagttatttaaattcattaaaattcaaatatggaagaatcatca |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39653251 |
agttagtaattcgctcaatgaattgatatgtattgcaccctcaaacacaattctcaaagttatttaaattcattaaaattcaaatatggaagaatcatca |
39653350 |
T |
|
| Q |
698 |
aaatacaatcaagatgcaatcaccaaagttttaaataatggtcgcggcggtagcgtatagaattttacaattttggatgttaccgatgttgcattacgga |
797 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
39653351 |
aaatacaatcaagatgcaatcaccaaagttttaaataatggtc---gcgctggcgtatagaattttacaattttggatgttaccgatgttgcgttatgga |
39653447 |
T |
|
| Q |
798 |
ttgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||| ||||||||| |
|
|
| T |
39653448 |
ttgtggttgttgcggtgtgaattaatcacaatattccacaactct |
39653492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 39673300 - 39673502
Alignment:
| Q |
9 |
agaataataattatatgagtaaacaaggtactgcaaatataatttctaaattctaacatagtcttaatcaactatttatttttacctggccacagtgtct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39673300 |
agaataataattatatgagtaaacaaggtactgcaaatataatttctaaattctaacatagtcttaatcaactatttatttttacctggccacagtgtct |
39673399 |
T |
|
| Q |
109 |
ttcatgaggggttgaagaataaggaaaattgccacaaagatgccgagaatgaggatagtctctgcatgcaatctgcaagtcaaaaacaaaattaacatcc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39673400 |
ctcatgaggggttgaagaataaggaaaattgccacaaagatgccgagaatgaggatagtctctgcatgcaatctgcaagtcaaaaacaaaattaacctcc |
39673499 |
T |
|
| Q |
209 |
aca |
211 |
Q |
| |
|
||| |
|
|
| T |
39673500 |
aca |
39673502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 586 - 689
Target Start/End: Original strand, 39664081 - 39664186
Alignment:
| Q |
586 |
tataaaggactgagttagtaattcgctcaatgaattgatatgtattgcacc--gtcaaacacaattctcaaagttatttaaattcattaaaattcaaata |
683 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
39664081 |
tataaaggaccgagttagtaattcactcaatgaattgatatgtattgcacccaatcaaacacaattctcaaagttatgtaaattcattaaaaatcaaata |
39664180 |
T |
|
| Q |
684 |
tggaag |
689 |
Q |
| |
|
| |||| |
|
|
| T |
39664181 |
tagaag |
39664186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 39662340 - 39662420
Alignment:
| Q |
146 |
agatgccgagaatgaggatagtctctgcatgcaatctgcaagtcaaaaacaaaattaacatccacaactagatgttgctga |
226 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
39662340 |
agatgccgggaatgaggatagtctctgcatgcaatctgcaagtcaaaaagaaaattaacctccacaactagatgttgctga |
39662420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 39664013 - 39664084
Alignment:
| Q |
498 |
aaaagactaatgtatttcgagattttcagtttcacgtgccattttggcattttcttaagtttggcaattata |
569 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | ||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
39664013 |
aaaagactaatgtatttggagattttcagtttcacttaccattttggtattttcataattttggcaattata |
39664084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 791 - 842
Target Start/End: Original strand, 25635888 - 25635939
Alignment:
| Q |
791 |
ttacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
25635888 |
ttacggattgcggttgttgcggtgtgaattaatcacaacattgcacacctct |
25635939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 744 - 842
Target Start/End: Complemental strand, 5430380 - 5430282
Alignment:
| Q |
744 |
gcggtagcgtatagaattttacaattttggatgttaccgatgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
||||| ||||||| ||||||| |||| || |||||| ||||||||||||| |||||||||||| ||||| | |||||||||||| ||||||||||||| |
|
|
| T |
5430380 |
gcggtcgcgtatatgattttacgatttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaactct |
5430282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 842
Target Start/End: Original strand, 17988946 - 17989023
Alignment:
| Q |
765 |
caattttggatgttaccgatgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
|||||| || |||||| | |||||| ||||||||| |||||| | ||| | |||||||||||| ||||||||||||| |
|
|
| T |
17988946 |
caatttcggctgttacgggtgttgcgatacggattgcggttgtcgaggtgtgaattaatcacaatattgcacaactct |
17989023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 30047974 - 30048081
Alignment:
| Q |
87 |
tttttacctggccacagtgtctttcatgaggggttgaagaataaggaaaattgccacaaagatgccgagaatgaggatagtctctgcatgcaatctgcaa |
186 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || || || ||||||| | |||| ||||| || | ||||||||||||||| ||||||| |||||| |
|
|
| T |
30047974 |
tttttacctggccacagtgtctctcatgaggagtggatgagaaaggaaatgtagcacacagatgtcgggcatgaggatagtctctacatgcaacctgcaa |
30048073 |
T |
|
| Q |
187 |
gtcaaaaa |
194 |
Q |
| |
|
|||||||| |
|
|
| T |
30048074 |
gtcaaaaa |
30048081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 765 - 840
Target Start/End: Complemental strand, 34664989 - 34664914
Alignment:
| Q |
765 |
caattttggatgttaccgatgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaact |
840 |
Q |
| |
|
|||||| || |||||| |||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
34664989 |
caatttcggttgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgcacaact |
34664914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 792 - 842
Target Start/End: Complemental strand, 9457798 - 9457748
Alignment:
| Q |
792 |
tacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
9457798 |
tacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactct |
9457748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 792 - 842
Target Start/End: Complemental strand, 9461895 - 9461845
Alignment:
| Q |
792 |
tacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
9461895 |
tacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactct |
9461845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 26828661 - 26828605
Alignment:
| Q |
782 |
gatgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaa |
838 |
Q |
| |
|
||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
26828661 |
gatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaa |
26828605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 795 - 842
Target Start/End: Original strand, 32617559 - 32617606
Alignment:
| Q |
795 |
ggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
32617559 |
ggattgcggttgtcgcggtgtaaattaatcacaacattgcacaactct |
32617606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 775 - 838
Target Start/End: Complemental strand, 37247715 - 37247652
Alignment:
| Q |
775 |
tgttaccgatgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaa |
838 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||| ||||| | |||||||||||||| ||||||| |
|
|
| T |
37247715 |
tgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaa |
37247652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 838
Target Start/End: Original strand, 31219520 - 31219561
Alignment:
| Q |
797 |
attgtggttgttgcggtataaattaatcacaacattgcacaa |
838 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
31219520 |
attgtggtagtcgcggtataaattactcacaacattgcacaa |
31219561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 775 - 838
Target Start/End: Complemental strand, 29866223 - 29866160
Alignment:
| Q |
775 |
tgttaccgatgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaa |
838 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||| | ||| | |||||||||||||||||||||| |
|
|
| T |
29866223 |
tgttactgatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaa |
29866160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 784 - 842
Target Start/End: Original strand, 13198058 - 13198116
Alignment:
| Q |
784 |
tgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
|||||| ||| |||||||| |||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
13198058 |
tgttgcgttaaggattgtgattgtcgcggtgtgaattaatcacaacattgcacaactct |
13198116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 792 - 842
Target Start/End: Complemental strand, 25968183 - 25968133
Alignment:
| Q |
792 |
tacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
||||||||| |||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
25968183 |
tacggattgcggttgtcgcggtgtgaattaatcacaacattgcacaactct |
25968133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 773 - 838
Target Start/End: Original strand, 46824604 - 46824669
Alignment:
| Q |
773 |
gatgttaccgatgttgcattacggattgtggttgttgcggtataaattaatcacaacattgcacaa |
838 |
Q |
| |
|
|||||||| ||||||||||||| ||||| | | || ||||| |||||||||||||||| ||||||| |
|
|
| T |
46824604 |
gatgttacagatgttgcattacagattgcgatcgtcgcggtgtaaattaatcacaacaatgcacaa |
46824669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 791 - 842
Target Start/End: Complemental strand, 13402267 - 13402216
Alignment:
| Q |
791 |
ttacggattgtggttgttgcggtataaattaatcacaacattgcacaactct |
842 |
Q |
| |
|
|||||||||| |||||| ||||| | |||||||||||||||| ||||||||| |
|
|
| T |
13402267 |
ttacggattgcggttgtcgcggtgtgaattaatcacaacattacacaactct |
13402216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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