View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117R-Insertion-5 (Length: 836)
Name: NF3117R-Insertion-5
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117R-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 9 - 441
Target Start/End: Original strand, 52605520 - 52605950
Alignment:
| Q |
9 |
ctctaatatccgatagattagagaaaattccttgttgaatatggggggaggtagctatggctttaccacgtgatgctcgaattaaggaccatgcttgaaa |
108 |
Q |
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| T |
52605520 |
ctctaatatccgatagattagagaaaattc-ttgttgaatatgggg-gaggtagctatggctttatcacgtgatgctcgaattaaggaccatgcttgaaa |
52605617 |
T |
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| Q |
109 |
agctgacacttattgagaggaaaaaaggagtttgcaggggaattaaatgggttgttttgactgtaacaatgcatgcattgaatttaatttcatcaatcga |
208 |
Q |
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| T |
52605618 |
agctgacacttattgagaggaaaaaaggagtttgcaggggaattaaatgggttgttttgactgtaacaatgcatgcattgaatttaatttcatcaatcga |
52605717 |
T |
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| Q |
209 |
cgttttgctttcgaaacacgtcttcttggcttattagagttaactgtatgttcttatatacttgtggctttcatatataattcccacacacaaacacatg |
308 |
Q |
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| T |
52605718 |
cgttttgctttcgaaacacgtcttcttggcttattagagttaactgtatgttcttatatacttgtggctttcatatataattcccacacacaaacacatg |
52605817 |
T |
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| Q |
309 |
tatattgtttttaaatatattataaatgcaaagtatttatcagtttaccaaaagtatttgtatgagatagtaaggaatttctttgggtttaactaaatgt |
408 |
Q |
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| T |
52605818 |
tatattgtttttaaatatcttataaatgcaaagtatttatcagtttaccaaaagtatttgtatgagatagtaaggaatttctttgggtttaactaaatgt |
52605917 |
T |
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| Q |
409 |
cttggttttgaatttaactccgatactcttata |
441 |
Q |
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| T |
52605918 |
cttggttttgaatttaactcagatactcttata |
52605950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 440 - 767
Target Start/End: Original strand, 52606219 - 52606546
Alignment:
| Q |
440 |
tatttttgaaggagaactttatcgttttttgcaatcatactcggtttgtaagattaattgtgcgtaaaagatattcaattttnnnnnnnnnntgtcagtt |
539 |
Q |
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| T |
52606219 |
tatttttgaaggagaactttatcattttttgtaatcatactcagcttgtaaaattaactc-gcgtaaaagatattcaatttaaaaaaaaatttgtcagtt |
52606317 |
T |
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| Q |
540 |
ttgtaaatgattaatcttcatattagtagtagagtctctcttttcaatcatctaaattaaaa-aattatttaaagaatttaagttgatgctgacgcatgt |
638 |
Q |
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| T |
52606318 |
ttgtaaatgattaatcttcatattagtagtagagtctctcttttcaatcatctaaattaaaaaaattatttaaagaatttaagttgatgctgacgcatgt |
52606417 |
T |
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| Q |
639 |
agataatgttttaaaaaagtgtatagcaataacctccttcattcatgtgacaaacagagacaacctgggatgataggttaactcaatggaattgccgtgg |
738 |
Q |
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| T |
52606418 |
agataatgttttaaaaaagtgtatagtaataacctccttcattcatgtgacaaacagagacaacctgggatgataggttaactcaatggaattgccgtgg |
52606517 |
T |
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| Q |
739 |
ctatgaaacgacagttgatactacattaa |
767 |
Q |
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| T |
52606518 |
ctatgaaacgacagttgatactacattaa |
52606546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 765 - 836
Target Start/End: Original strand, 52607137 - 52607208
Alignment:
| Q |
765 |
taaagccggccatttctgtttaaacgggaaggttacttgcccatcttcctatctttttcaactattcgcacc |
836 |
Q |
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| T |
52607137 |
taaagccggccatttctgtttaaacgggaaggttacttgcccatcttcctatctttttcaactattcgcacc |
52607208 |
T |
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