View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117R-Insertion-6 (Length: 790)
Name: NF3117R-Insertion-6
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117R-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 116 - 744
Target Start/End: Complemental strand, 7557424 - 7556793
Alignment:
| Q |
116 |
tggtgattatggagtagctagagatgctttaataaactatctttcaccgcgagacccacatattttaacattgaaataaatgaatatcgttgttgaaatc |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7557424 |
tggtgactatggagtagctagagatgctttaataaactatctttcaccgcgagacccacatattttaacattgaaataaatgaatattgttgttgaaatc |
7557325 |
T |
|
| Q |
216 |
tatattaaattattaatgtaaagttaatctgagatccatattgtactatcatattgtattannnnnnnnnnnnnnn-ctacgttatcccttgatgaatta |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
7557324 |
tatattaaattattaatgtaaagttaatctgagatccatattgtactatcatattgtattattttttaattttttttctacgttatcccttggtgaatta |
7557225 |
T |
|
| Q |
315 |
gggtaatttacttttatnnnnnnnnnc----tcattgtcttcattgtttcttttaatcagacaaaatgagatatatattaccacaataaaaatagtctgc |
410 |
Q |
| |
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| T |
7557224 |
gagtaatttacttttataaaaaaaaaaaaaatcattttcttcgttgttttttttaaccagacagaatgagatatatattaccacaataaaaataatctgc |
7557125 |
T |
|
| Q |
411 |
tctctagcacaaggattgcaaggcagagtgaaacaatattacaacaaaaagtaaccgaaagaattaaagagnnnnnnngacgatcaattgaaacccaaac |
510 |
Q |
| |
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|| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
7557124 |
tccctagcacaaggattgcaaggtagagcgaaacaatattacaacaaaa-gtaaccgaaaaaattaaagagaaaaaaagacgatcaattgaaacccaaac |
7557026 |
T |
|
| Q |
511 |
aaataaagggttgttaccaccacatgaaatgaccaaaaggaaaacgagcatttttaactttcaaccacaaaaaggaataaacttttactttttccatgag |
610 |
Q |
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| T |
7557025 |
aaacaaagggttgttaccaccacatgaaatgaccaaaaggaaaacgaacatttttatctttcaaccacaaaaaggaagaaacttttactttttccatgag |
7556926 |
T |
|
| Q |
611 |
ttgcggaatagattttgctttattctgagcctattattcctttcagtccacaacacccaaacacnnnnnnngccaaattagccgcaaaaaagattgttga |
710 |
Q |
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| T |
7556925 |
ttgcggaattgactttgctttattccgagcctattattcctttcagtccacaacatccaaagac-aacaaagccaaattagccgcaaaaaagattgctga |
7556827 |
T |
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| Q |
711 |
ggttttaatcctcttgtagaataagcaaactgag |
744 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
7556826 |
ggttttaatcctcttgtagaataagcaaactgag |
7556793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 7557573 - 7557495
Alignment:
| Q |
12 |
agtattttgatagtgtgtctaagatatttatacttgtcccataaaagaataatccgggttaacgacgatgtttagaggt |
90 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7557573 |
agtattttgttattgtgtctaagatatttatacttgtcccatacaagaataatccgggttaacgacgatgtttagaggt |
7557495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 500 - 785
Target Start/End: Complemental strand, 46843270 - 46842982
Alignment:
| Q |
500 |
gaaacccaaacaaataaagggttgttaccaccacatgaaatgaccaaaaggaaaacgagcatttttaactttcaaccacaaaaaggaataaacttttact |
599 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||||| |||| |||||| ||||| | |||||||| |||||| ||| ||||| || ||||||||||| |
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| T |
46843270 |
gaaacccaaacaaacaaaggattgttgccaccacatataatggtcaaaagaaaaactaacatttttagctttcatccatcaaaagtaagaaacttttact |
46843171 |
T |
|
| Q |
600 |
ttttccatgagttgcggaatagattttgctttattct----gagcctattattcctttcagtccacaacacccaaacacnnnnnnngccaaattagccgc |
695 |
Q |
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||| ||| | |||| |||| ||||||||| |||| | || | |||||||||||||||| |||||||||||||||| ||||||||| | |
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| T |
46843170 |
tttcccagcaattgcagaattgattttgctatattattaaagaacatattattcctttcagttcacaacacccaaacac-aacatagccaaattaattgt |
46843072 |
T |
|
| Q |
696 |
aaaaaagattgttgaggttttaatcctcttgtagaataagcaaactgagtaaaatgattcgaaatatgctgaggttccacagaatagaca |
785 |
Q |
| |
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| T |
46843071 |
caaaaagatcgtggaggttttaagccttatgtagaataagcaaactgaataaaataatcttaaatatgttgaggttccactgaattgaca |
46842982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 634
Target Start/End: Original strand, 36188712 - 36188804
Alignment:
| Q |
542 |
accaaaaggaaaacgagcatttttaactttcaaccacaaaaaggaataaacttttactttttccatgagttgcggaatagattttgctttatt |
634 |
Q |
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| T |
36188712 |
accaaaaggaaaacaaacatttttagctttcaaccatccaaaggaagaaatttttaccttttccactaattgcataatagatttagctttatt |
36188804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 606
Target Start/End: Original strand, 55730927 - 55731040
Alignment:
| Q |
493 |
atcaattgaaacccaaacaaataaagggttgttaccaccacatgaaatgaccaaaaggaaaacgagcatttttaactttcaaccacaaaaaggaataaac |
592 |
Q |
| |
|
||||||||| ||| || |||| ||| ||||||| ||||||||| ||| ||||| |||| | |||| | ||| |||||||| || |||| |||||||| |
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| T |
55730927 |
atcaattgatacctaagcaaacaaatggttgttgccaccacatatgatggacaaaaagaaagctagcaatattacctttcaacaaccaaaaagaataaac |
55731026 |
T |
|
| Q |
593 |
ttttactttttcca |
606 |
Q |
| |
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||||||||| |||| |
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| T |
55731027 |
ttttactttgtcca |
55731040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 503 - 633
Target Start/End: Complemental strand, 2947803 - 2947673
Alignment:
| Q |
503 |
acccaaacaaataaagggttgttaccaccacatgaaatgaccaaaaggaaaacgagcatttttaactttcaaccacaaaaaggaataaacttttactttt |
602 |
Q |
| |
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|||||||||| ||||||||||| | ||||||| |||||||||||||||||| | |||||| | |||||| |||| || ||| | ||||||| ||||| |
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| T |
2947803 |
acccaaacaagcaaagggttgtttcaaccacatcaaatgaccaaaaggaaaattaacattttgagctttcagccaccaataggtagaaactttcacttta |
2947704 |
T |
|
| Q |
603 |
tccatgagttgcggaatagattttgctttat |
633 |
Q |
| |
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| T |
2947703 |
tccatcagcttcagaatagatttagctttat |
2947673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 634
Target Start/End: Original strand, 3749499 - 3749629
Alignment:
| Q |
503 |
acccaaacaaataaagggttgttaccaccacatgaaatgaccaaaaggaaaacgagcatttttaactttcaaccacaaaaaggaataaacttttactttt |
602 |
Q |
| |
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||||||| || |||||||||||| | || | || ||||||||||||| |||| | |||||| |||||||| |||| || || | ||| ||||||||| |
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| T |
3749499 |
acccaaataagtaaagggttgtttcaac-atataaaatgaccaaaagaaaaattaacattttgaactttcagccaccaatagatagaaaattttacttta |
3749597 |
T |
|
| Q |
603 |
tccatgagttgcggaatagattttgctttatt |
634 |
Q |
| |
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|||||||| | | |||||||||| |||||||| |
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| T |
3749598 |
tccatgagcttccgaatagatttagctttatt |
3749629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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