View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117R-Insertion-8 (Length: 718)
Name: NF3117R-Insertion-8
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117R-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 110 - 362
Target Start/End: Original strand, 24566729 - 24566981
Alignment:
| Q |
110 |
gtggatggtttctgcattgtcgccctatttgtggaatttgtttagaaaagaggnnnnnnnnngtaaacaaaatcttgagccagactgtttttttcatcaa |
209 |
Q |
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| T |
24566729 |
gtggatggtttctgcattgtcgccctatttgtggaatttgtttagaaaataggaaaaaaaaagtaaacaaaatcttgagccagactgtttttttcatcaa |
24566828 |
T |
|
| Q |
210 |
ttgannnnnnnnagatgatcaaatggtannnnnnnattggnnnnnnntaggagtaaaagattatatgagagaagttacttataatttttgttaacgcaag |
309 |
Q |
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| T |
24566829 |
ttgattttttttagatgatcaaatggtatttttttattggaaaaaaataggagtaaaagattatatgagagaagttacttataatttttgttaacgcaag |
24566928 |
T |
|
| Q |
310 |
aggaagagaagacttcaaaaaggtgaattgaaatcaaaattctgaatatggag |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566929 |
aggaagagaagacttcaaaaaggtgaattgaaatcaaaattctgaatatggag |
24566981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 8e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 396 - 689
Target Start/End: Original strand, 16615550 - 16615852
Alignment:
| Q |
396 |
taattcaatgcaagttagagtcagacaaaagtaatttgttctttcggaaaaattataa-----tacttactcttcttcaatgatttgcatgcaacaattt |
490 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||||||||||| |
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| T |
16615550 |
taattcgatgcaagttagagtcagacaaaaataatttgttctttcggaaaagttataataaagtacttactattcttcattgaattgcatgcaacaattt |
16615649 |
T |
|
| Q |
491 |
tggtgcttgtacactattcat-cgcaaaaacacggcacatctgcaataactttcaattaagatagttgtaacttcaatagaa------cgaacacattct |
583 |
Q |
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| T |
16615650 |
cgttgcttgcacaatattcatccgcaaaaacaccgcacatctgcaataacttttgatt-agatagttgaaacttcaatagaattatggtggacagattct |
16615748 |
T |
|
| Q |
584 |
atacatctaccgtgggggtttttaatagaaggagcggttgcattttgacttttcaaaatatggcaaccgacttccatttccaaccgtttaggttttatgg |
683 |
Q |
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|||||| || |||||||| ||| ||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | | |
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| T |
16615749 |
atacatttatcgtggggg-tttgaattgaaggagcggtttcattttgactttt-gtaatatggtaaccgacttccatttccaaccgtttaggtttttttg |
16615846 |
T |
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| Q |
684 |
aatatt |
689 |
Q |
| |
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|||||| |
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| T |
16615847 |
aatatt |
16615852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 257 - 390
Target Start/End: Original strand, 16615340 - 16615473
Alignment:
| Q |
257 |
taggagtaaaagattatatgagagaagttacttataatttttgttaacgcaagaggaagagaagacttcaaaaaggtgaattgaaatcaaaattctgaat |
356 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16615340 |
taggagtaaaagatgatatgagagaagttacttatgatttttgttaacgtaagaggaagagaagacttcaaaaacttgaattgaaatcaaaattctgaat |
16615439 |
T |
|
| Q |
357 |
atggagagtctctcaacctgcatacattttccca |
390 |
Q |
| |
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| T |
16615440 |
atggagggtctctcaatccgtatacatcttccca |
16615473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 8e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 410 - 689
Target Start/End: Complemental strand, 45532167 - 45531879
Alignment:
| Q |
410 |
ttagagtcagacaaaagtaatttgttctttcggaaaaattataa-----tacttactcttcttcaatgatttgcatgcaacaattttggtgcttgtacac |
504 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||||||||||| | ||||| ||| |
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| T |
45532167 |
ttagtgtcagacaaaagtaatttgttctttcggaaaagttataataaagtacttactattcttcattgaattgcatgcaacaatttcgttgctttcacaa |
45532068 |
T |
|
| Q |
505 |
tattcat-cgcaaaaacacggcacatctgcaataactttcaattaagatagttgtaacttcaatagaac------gaacacattctatacatctaccgtg |
597 |
Q |
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||||||| || |||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||| | || |||||||||||||| ||| |
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| T |
45532067 |
tattcatccggaaaaacaccgcacatctgcaataacttttgatt-agatagttgaaacttcaatagaactatggtgggcagattctatacatctatcgt- |
45531970 |
T |
|
| Q |
598 |
ggggtttttaatagaaggagcggttgcattttgacttttcaaaatatggcaaccgacttccatttccaaccgtttaggttttatggaatatt |
689 |
Q |
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| T |
45531969 |
ggggttttgaattgaaggagcggttgcattttgactttt-gtaatatggtaaccgacttccatttccaaccgtttaggttttttgaaatatt |
45531879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 257 - 390
Target Start/End: Complemental strand, 45532376 - 45532241
Alignment:
| Q |
257 |
taggagtaaaagat--tatatgagagaagttacttataatttttgttaacgcaagaggaagagaagacttcaaaaaggtgaattgaaatcaaaattctga |
354 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
45532376 |
taggagtaaaagatgatatatgagagaagttacttatgatttttgttaaggtaagaggaagagaagacttcaaaaacttgaattgaaatcaaaattctaa |
45532277 |
T |
|
| Q |
355 |
atatggagagtctctcaacctgcatacattttccca |
390 |
Q |
| |
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|||||||| ||||||||| | | |||||| |||||| |
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| T |
45532276 |
atatggagggtctctcaatccgtatacatcttccca |
45532241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 44339983 - 44340029
Alignment:
| Q |
111 |
tggatggtttctgcattgtcgccctatttgtggaatttgtttagaaa |
157 |
Q |
| |
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|||||||||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
44339983 |
tggatggtttctgcatcgtccccctatttctggaatttgtttagaaa |
44340029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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